| Literature DB >> 31496134 |
Kang Huang1, Jianghua Zhong1, Qiang Li1, Wei Zhang1, Zibin Chen1, Yilei Zhou1, Miao Wu1, Zanrui Zhong1, Shijuan Lu1, Shufang Zhang2.
Abstract
BACKGROUND: Coronary heart disease (CHD) is one of the most severe cardiovascular diseases. Cyclin-dependent kinase inhibitor 2B antisense RNA 1 (CDKN2B-AS1) is a significant susceptibility locus for cardiovascular disease by regulating inflammation response and cell cycle. The aim of this study was to assess whether CDKN2B-AS1 polymorphisms are associated with CHD risk in the Chinese Han population.Entities:
Keywords: zzm321990CDKN2B-AS1zzm321990; case-control study; coronary heart disease; polymorphism; subgroups analysis
Mesh:
Substances:
Year: 2019 PMID: 31496134 PMCID: PMC6825846 DOI: 10.1002/mgg3.955
Source DB: PubMed Journal: Mol Genet Genomic Med ISSN: 2324-9269 Impact factor: 2.183
Demographic and clinical characteristics of the study objects
| Characteristics |
CHD patients |
Healthy controls |
|
|---|---|---|---|
| Age, years | 61.32 ± 11.70 | 60.69 ± 6.43 | .289 |
| >61 | 250 (49.9%) | 233 (47.0%) | |
| ≤61 | 251 (50.1%) | 263 (53.0%) | |
| Sex | |||
| Male | 320 (63.9%) | 318 (64.1%) | .895 |
| Female | 181 (36.1%) | 178 (35.9%) | |
| HDL (mmol/L) | 1.13 ± 0.25 | 1.09 ± 0.23 |
|
| LDL (mmol/L) | 1.92 ± 0.82 | 2.55 ± 0.71 |
|
| PLT (109/L) | 169.37 ± 75.18 | 211.10 ± 55.50 |
|
| PDW (%) | 14.30 ± 2.87 | 13.74 ± 2.87 |
|
| MPV (FL) | 13.01 ± 7.14 | 10.91 ± 1.23 |
|
| PCT (%) | 1.08 ± 3.151 | 0.30 ± 0.89 |
|
| WBC | 11.68 ± 15.45 | 5.93 ± 1.50 |
|
| RBC | 14.72 ± 35.86 | 4.84 ± 0.45 |
|
| HGB | 132.67 ± 31.56 | 148.48 ± 14.77 |
|
| Urea | 5.81 ± 6.51 | 7.01 ± 21.29 | .241 |
| UA (μmol/L) | 292.30 ± 88.75 | 330.55 ± 82.58 |
|
| TG (mmol/L) | 1.78 ± 1.48 | 1.77 ± 1.13 | .947 |
| TC (mmol/L) | 4.09 ± 1.16 | 4.82 ± 5.47 |
|
| Hypertension | 296 (60%) | ||
| Diabetes | 101 (20%) | ||
| Gastritis | 59 (12%) |
Numbers in bold mean statistical significance.
Abbreviations: CHD, coronary heart disease; HDL, high‐density lipoprotein; HGB, hemoglobin; LDL, low‐density lipoprotein; MPV, mean platelet volume; PCT, plateletcrit; PDW, platelet distribution width; PLT, platelet; RBC, red blood cells; TC, total cholesterol; TG, triglyceride; UA, uric acid; WBC, white blood cells.
Comparison of genotype and allele frequencies between cases and controls
| SNP | Location: Position | Groups | Genotype (counts) |
| Allele (counts) |
| MAF | HWE | |||
|---|---|---|---|---|---|---|---|---|---|---|---|
| rs10115049 | Chr9: 22032120 | AA | GA | GG | A | G | |||||
| Cases | 73 (14.6%) | 208 (41.5%) | 220 (43.9%) | 354 (35.3%) | 648 (64.7%) | 0.353 | |||||
| Controls | 63 (12.7%) | 227 (45.8%) | 206 (41.5%) | .370 | 353 (35.6%) | 639 (64.4%) | .905 | 0.356 | 1.000 | ||
| rs75227345 | Chr9: 22042298 | TT | TC | CC | T | C | |||||
| Cases | 26 (5.2%) | 139 (27.7%) | 336 (67.1%) | 191 (19.1%) | 811 (80.9%) | 0.191 | |||||
| Controls | 17 (3.4%) | 127 (25.6%) | 352 (71.0%) | .257 | 161 (16.2%) | 831 (83.8%) | .097 | 0.162 | 0.188 | ||
| rs2383205 | Chr9: 22060936 | AA | GA | GG | A | G | |||||
| Cases | 10 (2.0%) | 115 (23.0%) | 376 (75.0%) | 135 (13.5%) | 867 (86.5%) | 0.134 | |||||
| Controls | 13 (2.6%) | 133 (26.8%) | 350 (50.4%) | .265 | 159 (16.0%) | 833 (84.0%) | .108 | 0.160 | 0.869 | ||
| rs10738606 | Chr9: 22088091 | AA | AT | TT | A | T | |||||
| Cases | 48 (9.6%) | 224 (45.0%) | 226 (45.4%) | 320 (32.1%) | 606 (67.9%) | 0.321 | |||||
| Controls | 74 (15.0%) | 230 (46.7%) | 188 (38.3%) |
| 378 (38.4%) | 676 (61.6%) |
| 0.384 | 0.776 | ||
| rs1333049 | Chr9: 22125504 | CC | CG | GG | C | G | |||||
| Cases | 110 (22.0%) | 263 (52.5%) | 128 (25.5%) | 483 (48.2%) | 519 (51.8%) | 0.482 | |||||
| Controls | 94 (19.0%) | 254 (51.2%) | 148 (29.8%) | .241 | 442 (44.6%) | 550 (55.4%) | .103 | 0.446 | 0.467 | ||
Numbers in bold mean statistical significance.
Abbreviations: HWE, Hardy–Weinberg equilibrium; MAF, minor allele frequency; SNP, single nucleotide polymorphism.
The association between CDKN28‐AS1 polymorphisms and CHD risk
| SNP | Model | Genotype/Allele | OR (95%CI) |
|
|---|---|---|---|---|
| rs10115049 | Codominant | AA/GG | 1.08 (0.73–1.59) | .690 |
| GA/GG | 0.86 (0.66–1.12) | .257 | ||
| Dominant | AA‐AG/GG | 0.91 (0.70–1.16) | .438 | |
| Recessive | AA/AG‐GG | 1.17 (0.81–1.68) | .396 | |
| Additive | 0.99 (0.83–1.18) | .894 | ||
| Allele | A/G | 0.99 (0.82–1.19) | .905 | |
| rs75227345 | Codominant | TT/CC | 1.59 (0.85–2.99) | .147 |
| TC/CC | 1.15 (0.87–1.53) | .332 | ||
| Dominant | TT‐CT/CC | 1.20 (0.92–1.58) | .178 | |
| Recessive | TT/CT‐CC | 1.53 (0.82–2.86) | .181 | |
| Additive | 1.20 (0.96–1.50) | .110 | ||
| Allele | T/C | 1.22 (0.96–1.53) | .097 | |
| rs2383205 | Codominant | AA/GG | 0.72 (0.31–1.66) | .435 |
| GA/GG | 0.80 (0.60–1.07) | .130 | ||
| Dominant | AA‐AG/GG | 0.79 (0.60–1.05) | .104 | |
| Recessive | AA/AG‐GG | 0.76 (0.33–1.75) | .515 | |
| Additive | 0.81 (0.64–1.04) | .103 | ||
| Allele | A/G | 0.82 (0.64–1.05) | .108 | |
| rs10738606 | Codominant | AA/TT | 0.54 (0.36–0.81) |
|
| TA/TT | 0.80 (0.61–1.05) | .108 | ||
| Dominant | AA‐AT/TT | 0.74 (0.57–0.95) |
| |
| Recessive | AA/AT‐TT | 0.60 (0.41–0.89) |
| |
| Additive | 0.75 (0.63–0.91) |
| ||
| Allele | A/T | 0.76 (0.63–0.91) |
| |
| rs1333049 | Codominant | CC/GG | 1.36 (0.95–1.96) | .095 |
| GC/GG | 1.20 (0.90–1.61) | .218 | ||
| Dominant | CC‐CG/GG | 1.25 (0.94–1.65) | .122 | |
| Recessive | CC/GC‐GG | 1.21 (0.89–1.65) | .231 | |
| Additive | 1.17 (0.98–1.40) | .089 | ||
| Allele | C/G | 1.16 (0.97–1.38) | .103 |
Numbers in bold mean statistical significance.
Abbreviations: 95% CI, 95% confidence interval; CHD, coronary heart disease; OR, odds ratio; SNP, single nucleotide polymorphism.
The association between CDKN28‐AS1 polymorphisms and CHD risk in the subgroups
| SNP | Subgroup | Homozygote | Heterozygote | Dominant | Recessive | Additive | Allele | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OR (95% CI) |
| OR (95% CI) |
| OR (95% CI) |
| OR (95% CI) |
| OR (95% CI) |
| OR (95% CI) |
| ||
| rs75227345 | Male | 2.62 (1.07–6.44) |
| 1.21 (0.84–1.73) | .309 | 1.32 (0.94–1.86) | .109 | 2.49 (1.02–6.10) |
| 1.35 (1.01–1.81) |
| 1.38 (1.03–1.86) |
|
| rs2383205 | Age ≤ 61 | 0.89 (0.23–3.45) | .864 | 0.61 (0.39–0.95) |
| 0.63 (0.41–0.97) |
| 1.01 (0.26–3.91) | .987 | 1.01 (0.26–3.91) | .987 | 0.72 (0.51–1.03) | .071 |
| Male | 0.30 (0.08–1.12) | 0.072 | 0.71 (0.49–1.02) | .065 | 0.67 (0.47–0.96) |
| 0.32 (0.09–1.21) | .094 | 0.67 (0.48–0.92) |
| 0.67 (0.49–0.93) |
| |
| rs10738606 | Age > 61 | 0.60 (0.33–1.08) | .089 | 0.86 (0.58–1.28) | .453 | 0.79 (0.54–1.15) | .217 | 0.64 (0.37–1.13) | .124 | 0.80 (0.61–1.04) | .100 | 0.74 (0.57–0.96) |
|
| Male | 0.44 (0.27–0.73) |
| 0.72 (0.51–1.00) | .051 | 0.64 (0.47–0.88) |
| 0.52 (0.33–0.84) |
| 0.68 (0.54–0.85) |
| 0.67 (0.53–0.85) |
| |
| rs1333049 | Male | 1.67 (1.06–2.64) |
| 1.08 (0.74–1.56) | .698 | 1.22 (0.86–1.73) | .264 | 1.59 (1.08–2.34) |
| 1.28 (1.02–1.60) |
| 1.26 (1.01–1.58) |
|
| Diabetes | 0.72 (0.39–1.32) | .284 | 0.53 (0.32–0.88) |
| 0.58 (0.36–0.93) |
| 1.07 (0.63–1.82) | .791 | 0.81 (0.59–1.12) | .199 | 0.81 (0.60–1.11) | .187 | |
Numbers in bold mean statistical significance.
Abbreviations: 95% CI, 95% confidence interval; CHD, coronary heart disease; OR, odds ratio; SNP, single nucleotide polymorphism.
Clinical characteristics of rs75227345 on CHD patients
| Characteristics |
| |||
|---|---|---|---|---|
| TT | CT | CC |
| |
| HDL (mmol/L) | 1.10 ± 0.29 | 1.13 ± 0.24 | 1.14 ± 0.26 | .786 |
| LDL (mmol/L) | 1.84 ± 0.60 | 1.96 ± 0.82 | 1.91 ± 0.84 | .753 |
| PLT (109/L) | 170.77 ± 37.87 | 157.71 ± 80.58 | 174.15 ± 74.70 | .097 |
| PDW (%) | 14.08 ± 2.61 | 14.41 ± 3.13 | 14.28 ± 2.80 | .846 |
| MPV (FL) | 11.08 ± 0.93 | 14.18 ± 8.67 | 12.67 ± 6.64 |
|
| PCT (%) | 0.19 ± 0.04 | 1.60 ± 3.72 | 0.93 ± 2.98 |
|
| WBC | 7.03 ± 2.65 | 14.83 ± 20.20 | 10.72 ± 13.42 |
|
| RBC | 4.82 ± 0.75 | 22.02 ± 46.70 | 12.44 ± 31.35 |
|
| HGB | 138.00 ± 20.16 | 125.37 ± 36.47 | 135.23 ± 29.61 |
|
| Urea | 5.43 ± 2.53 | 5.75 ± 2.11 | 5.86 ± 7.80 | .942 |
| UA (μmol/L) | 309.72 ± 81.47 | 297.77 ± 82.16 | 288.74 ± 91.79 | .372 |
| TG (mmol/L) | 1.69 ± 1.10 | 1.88 ± 1.67 | 1.75 ± 1.43 | .644 |
| TC (mmol/L) | 3.93 ± 1.01 | 4.27 ± 1.31 | 4.03 ± 1.09 | .110 |
Numbers in bold mean statistical significance.
Abbreviations: CHD, coronary heart disease; HDL, high‐density lipoprotein; HGB, hemoglobin; LDL, low‐density lipoprotein; MPV, mean platelet volume; PCT, plateletcrit; PDW, platelet distribution width; PLT, platelet; RBC, red blood cells; TC, total cholesterol; TG, triglyceride; UA, uric acid; WBC, white blood cells.
Figure 1Linkage disequilibrium plots containing five polymorphisms from CDKN2B‐AS1. Block 1 includes rs10115049 and rs75227345. The numbers inside the diamonds indicate the D′ for pairwise analyses