Literature DB >> 31475820

Evidence for Modulation of Oxygen Rebound Rate in Control of Outcome by Iron(II)- and 2-Oxoglutarate-Dependent Oxygenases.

Juan Pan, Eliott S Wenger, Megan L Matthews, Christopher J Pollock, Minakshi Bhardwaj1, Amelia J Kim, Benjamin D Allen, Robert B Grossman1, Carsten Krebs, J Martin Bollinger.   

Abstract

Iron(II)- and 2-oxoglutarate-dependent (Fe/2OG) oxygenases generate iron(IV)-oxo (ferryl) intermediates that can abstract hydrogen from aliphatic carbons (R-H). Hydroxylation proceeds by coupling of the resultant substrate radical (R•) and oxygen of the Fe(III)-OH complex ("oxygen rebound"). Nonhydroxylation outcomes result from different fates of the Fe(III)-OH/R• state; for example, halogenation results from R• coupling to a halogen ligand cis to the hydroxide. We previously suggested that halogenases control substrate-cofactor disposition to disfavor oxygen rebound and permit halogen coupling to prevail. Here, we explored the general implication that, when a ferryl intermediate can ambiguously target two substrate carbons for different outcomes, rebound to the site capable of the alternative outcome should be slower than to the adjacent, solely hydroxylated site. We evaluated this prediction for (i) the halogenase SyrB2, which exclusively hydroxylates C5 of norvaline appended to its carrier protein but can either chlorinate or hydroxylate C4 and (ii) two bifunctional enzymes that normally hydroxylate one carbon before coupling that oxygen to a second carbon (producing an oxacycle) but can, upon encountering deuterium at the first site, hydroxylate the second site instead. In all three cases, substrate hydroxylation incorporates a greater fraction of solvent-derived oxygen at the site that can also undergo the alternative outcome than at the other site, most likely reflecting an increased exchange of the initially O2-derived oxygen ligand in the longer-lived Fe(III)-OH/R• states. Suppression of rebound may thus be generally important for nonhydroxylation outcomes by these enzymes.

Entities:  

Year:  2019        PMID: 31475820      PMCID: PMC6900985          DOI: 10.1021/jacs.9b06689

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  55 in total

1.  α-Amine Desaturation of d-Arginine by the Iron(II)- and 2-(Oxo)glutarate-Dependent l-Arginine 3-Hydroxylase, VioC.

Authors:  Noah P Dunham; Andrew J Mitchell; José M Del Río Pantoja; Carsten Krebs; J Martin Bollinger; Amie K Boal
Journal:  Biochemistry       Date:  2018-11-07       Impact factor: 3.162

2.  Frontier Molecular Orbital Contributions to Chlorination versus Hydroxylation Selectivity in the Non-Heme Iron Halogenase SyrB2.

Authors:  Martin Srnec; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2017-02-02       Impact factor: 15.419

3.  SyrB2 in syringomycin E biosynthesis is a nonheme FeII alpha-ketoglutarate- and O2-dependent halogenase.

Authors:  Frédéric H Vaillancourt; Jun Yin; Christopher T Walsh
Journal:  Proc Natl Acad Sci U S A       Date:  2005-07-07       Impact factor: 11.205

4.  Functional characterization of recombinant hyoscyamine 6β-hydroxylase from Atropa belladonna.

Authors:  Jing Li; Marco J van Belkum; John C Vederas
Journal:  Bioorg Med Chem       Date:  2012-05-26       Impact factor: 3.641

5.  Nonheme oxo-iron(IV) intermediates form an oxyl radical upon approaching the C-H bond activation transition state.

Authors:  Shengfa Ye; Frank Neese
Journal:  Proc Natl Acad Sci U S A       Date:  2011-01-10       Impact factor: 11.205

Review 6.  The 2-His-1-carboxylate facial triad: a versatile platform for dioxygen activation by mononuclear non-heme iron(II) enzymes.

Authors:  Kevin D Koehntop; Joseph P Emerson; Lawrence Que
Journal:  J Biol Inorg Chem       Date:  2005-03-01       Impact factor: 3.358

7.  Trapping and spectroscopic characterization of an FeIII-superoxo intermediate from a nonheme mononuclear iron-containing enzyme.

Authors:  Michael M Mbughuni; Mrinmoy Chakrabarti; Joshua A Hayden; Emile L Bominaar; Michael P Hendrich; Eckard Münck; John D Lipscomb
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-13       Impact factor: 11.205

8.  Crystal structure of the non-haem iron halogenase SyrB2 in syringomycin biosynthesis.

Authors:  Leah C Blasiak; Frédéric H Vaillancourt; Christopher T Walsh; Catherine L Drennan
Journal:  Nature       Date:  2006-03-16       Impact factor: 49.962

Review 9.  Non-heme Fe(IV)-oxo intermediates.

Authors:  Carsten Krebs; Danica Galonić Fujimori; Christopher T Walsh; J Martin Bollinger
Journal:  Acc Chem Res       Date:  2007-06-02       Impact factor: 22.384

10.  1-Aminocyclopropane-1-carboxylic acid oxidase reaction mechanism and putative post-translational activities of the ACCO protein.

Authors:  David R Dilley; Zhenyong Wang; Deena K Kadirjan-Kalbach; Fillipos Ververidis; Randolph Beaudry; Kallaithe Padmanabhan
Journal:  AoB Plants       Date:  2013-10-25       Impact factor: 3.276

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  8 in total

1.  Nature's Machinery, Repurposed: Expanding the Repertoire of Iron-Dependent Oxygenases.

Authors:  Noah P Dunham; Frances H Arnold
Journal:  ACS Catal       Date:  2020-09-28       Impact factor: 13.084

2.  An Iron(IV)-Oxo Intermediate Initiating l-Arginine Oxidation but Not Ethylene Production by the 2-Oxoglutarate-Dependent Oxygenase, Ethylene-Forming Enzyme.

Authors:  Rachelle A Copeland; Katherine M Davis; Tokufu Kent C Shoda; Elizabeth J Blaesi; Amie K Boal; Carsten Krebs; J Martin Bollinger
Journal:  J Am Chem Soc       Date:  2021-02-01       Impact factor: 15.419

3.  Synthesis of 6,6- and 7,7-Difluoro-1-acetamidopyrrolizidines and Their Oxidation Catalyzed by the Nonheme Fe Oxygenase LolO.

Authors:  Nabin Panth; Eliott S Wenger; Carsten Krebs; J Martin Bollinger; Robert B Grossman
Journal:  Chembiochem       Date:  2022-05-17       Impact factor: 3.461

4.  Evaluation of a concerted vs. sequential oxygen activation mechanism in α-ketoglutarate-dependent nonheme ferrous enzymes.

Authors:  Serra Goudarzi; Shyam R Iyer; Jeffrey T Babicz; James J Yan; Günther H J Peters; Hans E M Christensen; Britt Hedman; Keith O Hodgson; Edward I Solomon
Journal:  Proc Natl Acad Sci U S A       Date:  2020-02-24       Impact factor: 11.205

5.  Nuclear Resonance Vibrational Spectroscopic Definition of the Facial Triad FeIV═O Intermediate in Taurine Dioxygenase: Evaluation of Structural Contributions to Hydrogen Atom Abstraction.

Authors:  Martin Srnec; Shyam R Iyer; Laura M K Dassama; Kiyoung Park; Shaun D Wong; Kyle D Sutherlin; Yoshitaka Yoda; Yasuhiro Kobayashi; Masayuki Kurokuzu; Makina Saito; Makoto Seto; Carsten Krebs; J Martin Bollinger; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2020-10-26       Impact factor: 15.419

6.  Molecular insights into the endoperoxide formation by Fe(II)/α-KG-dependent oxygenase NvfI.

Authors:  Takahiro Mori; Rui Zhai; Richiro Ushimaru; Yudai Matsuda; Ikuro Abe
Journal:  Nat Commun       Date:  2021-07-20       Impact factor: 14.919

7.  Molecular insights into the unusually promiscuous and catalytically versatile Fe(II)/α-ketoglutarate-dependent oxygenase SptF.

Authors:  Hui Tao; Takahiro Mori; Heping Chen; Shuang Lyu; Akihito Nonoyama; Shoukou Lee; Ikuro Abe
Journal:  Nat Commun       Date:  2022-01-10       Impact factor: 14.919

Review 8.  Structural basis for endoperoxide-forming oxygenases.

Authors:  Takahiro Mori; Ikuro Abe
Journal:  Beilstein J Org Chem       Date:  2022-06-21       Impact factor: 2.544

  8 in total

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