Literature DB >> 20837547

Trapping and spectroscopic characterization of an FeIII-superoxo intermediate from a nonheme mononuclear iron-containing enzyme.

Michael M Mbughuni1, Mrinmoy Chakrabarti, Joshua A Hayden, Emile L Bominaar, Michael P Hendrich, Eckard Münck, John D Lipscomb.   

Abstract

Fe(III)-O(2)*(-) intermediates are well known in heme enzymes, but none have been characterized in the nonheme mononuclear Fe(II) enzyme family. Many steps in the O(2) activation and reaction cycle of Fe(II)-containing homoprotocatechuate 2,3-dioxygenase are made detectable by using the alternative substrate 4-nitrocatechol (4NC) and mutation of the active site His200 to Asn (H200N). Here, the first intermediate (Int-1) observed after adding O(2) to the H200N-4NC complex is trapped and characterized using EPR and Mössbauer (MB) spectroscopies. Int-1 is a high-spin (S(1) = 5/2) Fe(III) antiferromagnetically (AF) coupled to an S(2) = 1/2 radical (J ≈ 6 cm(-1) in ). It exhibits parallel-mode EPR signals at g = 8.17 from the S = 2 multiplet, and g = 8.8 and 11.6 from the S = 3 multiplet. These signals are broadened significantly by hyperfine interactions (A((17)O) ≈ 180 MHz). Thus, Int-1 is an AF-coupled species. The experimental observations are supported by density functional theory calculations that show nearly complete transfer of spin density to the bound O(2). Int-1 decays to form a second intermediate (Int-2). MB spectra show that it is also an AF-coupled Fe(III)-radical complex. Int-2 exhibits an EPR signal at g = 8.05 arising from an S = 2 state. The signal is only slightly broadened by (< 3% spin delocalization), suggesting that Int-2 is a peroxo-Fe(III)-4NC semiquinone radical species. Our results demonstrate facile electron transfer between Fe(II), O(2), and the organic ligand, thereby supporting the proposed wild-type enzyme mechanism.

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Year:  2010        PMID: 20837547      PMCID: PMC2947897          DOI: 10.1073/pnas.1010015107

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  35 in total

1.  Cytochrome P450cam and its complexes. Mössbauer parameters of the heme iron.

Authors:  M Sharrock; P G Debrunner; C Schulz; J D Lipscomb; V Marshall; I C Gunsalus
Journal:  Biochim Biophys Acta       Date:  1976-01-20

2.  Binding of 17O-labeled substrate and inhibitors to protocatechuate 4,5-dioxygenase-nitrosyl complex. Evidence for direct substrate binding to the active site Fe2+ of extradiol dioxygenases.

Authors:  D M Arciero; J D Lipscomb
Journal:  J Biol Chem       Date:  1986-02-15       Impact factor: 5.157

3.  Spectroscopic studies of isopenicillin N synthase. A mononuclear nonheme Fe2+ oxidase with metal coordination sites for small molecules and substrate.

Authors:  V J Chen; A M Orville; M R Harpel; C A Frolik; K K Surerus; E Münck; J D Lipscomb
Journal:  J Biol Chem       Date:  1989-12-25       Impact factor: 5.157

4.  Brevibacterium fuscum protocatechuate 3,4-dioxygenase. Purification, crystallization, and characterization.

Authors:  J W Whittaker; J D Lipscomb; T A Kent; E Münck
Journal:  J Biol Chem       Date:  1984-04-10       Impact factor: 5.157

5.  Mechanism for catechol ring-cleavage by non-heme iron extradiol dioxygenases.

Authors:  Per E M Siegbahn; Fredrik Haeffner
Journal:  J Am Chem Soc       Date:  2004-07-28       Impact factor: 15.419

6.  Electron paramagnetic resonance crystallography of 17O-enriched oxycobaltomyoglobin: stereoelectronic structure of the cobalt dioxygen system.

Authors:  L C Dickinson; J C Chien
Journal:  Proc Natl Acad Sci U S A       Date:  1980-03       Impact factor: 11.205

7.  Direct detection of oxygen intermediates in the non-heme Fe enzyme taurine/alpha-ketoglutarate dioxygenase.

Authors:  Denis A Proshlyakov; Timothy F Henshaw; Greta R Monterosso; Matthew J Ryle; Robert P Hausinger
Journal:  J Am Chem Soc       Date:  2004-02-04       Impact factor: 15.419

8.  EPR and Mössbauer studies of protocatechuate 4,5-dioxygenase. Characterization of a new Fe2+ environment.

Authors:  D M Arciero; J D Lipscomb; B H Huynh; T A Kent; E Münck
Journal:  J Biol Chem       Date:  1983-12-25       Impact factor: 5.157

9.  Crystallographic comparison of manganese- and iron-dependent homoprotocatechuate 2,3-dioxygenases.

Authors:  Matthew W Vetting; Lawrence P Wackett; Lawrence Que; John D Lipscomb; Douglas H Ohlendorf
Journal:  J Bacteriol       Date:  2004-04       Impact factor: 3.490

10.  The first direct characterization of a high-valent iron intermediate in the reaction of an alpha-ketoglutarate-dependent dioxygenase: a high-spin FeIV complex in taurine/alpha-ketoglutarate dioxygenase (TauD) from Escherichia coli.

Authors:  John C Price; Eric W Barr; Bhramara Tirupati; J Martin Bollinger; Carsten Krebs
Journal:  Biochemistry       Date:  2003-06-24       Impact factor: 3.162

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  60 in total

1.  O(2)-evolving chlorite dismutase as a tool for studying O(2)-utilizing enzymes.

Authors:  Laura M K Dassama; Timothy H Yosca; Denise A Conner; Michael H Lee; Béatrice Blanc; Bennett R Streit; Michael T Green; Jennifer L DuBois; Carsten Krebs; J Martin Bollinger
Journal:  Biochemistry       Date:  2012-02-13       Impact factor: 3.162

2.  Quantitative Interpretation of Multifrequency Multimode EPR Spectra of Metal Containing Proteins, Enzymes, and Biomimetic Complexes.

Authors:  Doros T Petasis; Michael P Hendrich
Journal:  Methods Enzymol       Date:  2015-07-21       Impact factor: 1.600

Review 3.  Oxygen activation by mononuclear nonheme iron dioxygenases involved in the degradation of aromatics.

Authors:  Yifan Wang; Jiasong Li; Aimin Liu
Journal:  J Biol Inorg Chem       Date:  2017-01-13       Impact factor: 3.358

Review 4.  Ring-cleaving dioxygenases with a cupin fold.

Authors:  Susanne Fetzner
Journal:  Appl Environ Microbiol       Date:  2012-01-27       Impact factor: 4.792

5.  Rate-Determining Attack on Substrate Precedes Rieske Cluster Oxidation during Cis-Dihydroxylation by Benzoate Dioxygenase.

Authors:  Brent S Rivard; Melanie S Rogers; Daniel J Marell; Matthew B Neibergall; Sarmistha Chakrabarty; Christopher J Cramer; John D Lipscomb
Journal:  Biochemistry       Date:  2015-07-21       Impact factor: 3.162

6.  Oxy intermediates of homoprotocatechuate 2,3-dioxygenase: facile electron transfer between substrates.

Authors:  Michael M Mbughuni; Mrinmoy Chakrabarti; Joshua A Hayden; Katlyn K Meier; Joseph J Dalluge; Michael P Hendrich; Eckard Münck; John D Lipscomb
Journal:  Biochemistry       Date:  2011-11-01       Impact factor: 3.162

7.  Observing 3-hydroxyanthranilate-3,4-dioxygenase in action through a crystalline lens.

Authors:  Yifan Wang; Kathy Fange Liu; Yu Yang; Ian Davis; Aimin Liu
Journal:  Proc Natl Acad Sci U S A       Date:  2020-07-30       Impact factor: 11.205

8.  Spectroscopic Evidence for the Two C-H-Cleaving Intermediates of Aspergillus nidulans Isopenicillin N Synthase.

Authors:  Esta Tamanaha; Bo Zhang; Yisong Guo; Wei-Chen Chang; Eric W Barr; Gang Xing; Jennifer St Clair; Shengfa Ye; Frank Neese; J Martin Bollinger; Carsten Krebs
Journal:  J Am Chem Soc       Date:  2016-07-05       Impact factor: 15.419

9.  Substrate-mediated oxygen activation by homoprotocatechuate 2,3-dioxygenase: intermediates formed by a tyrosine 257 variant.

Authors:  Michael M Mbughuni; Katlyn K Meier; Eckard Münck; John D Lipscomb
Journal:  Biochemistry       Date:  2012-10-29       Impact factor: 3.162

10.  Structural basis for the role of tyrosine 257 of homoprotocatechuate 2,3-dioxygenase in substrate and oxygen activation.

Authors:  Elena G Kovaleva; John D Lipscomb
Journal:  Biochemistry       Date:  2012-10-29       Impact factor: 3.162

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