| Literature DB >> 31365329 |
Raghav Kalia1,2, Adam Frost3,2,4.
Abstract
Cells have evolved diverse protein-based machinery to reshape, cut, or fuse their membrane-delimited compartments. Dynamin superfamily proteins are principal components of this machinery and use their ability to hydrolyze GTP and to polymerize into helices and rings to achieve these goals. Nucleotide-binding, hydrolysis, and exchange reactions drive significant conformational changes across the dynamin family, and these changes alter the shape and stability of supramolecular dynamin oligomers, as well as the ability of dynamins to bind receptors and membranes. Mutations that interfere with the conformational repertoire of these enzymes, and hence with membrane fission, exist in several inherited human diseases. Here, we discuss insights from new x-ray crystal structures and cryo-EM reconstructions that have enabled us to infer some of the allosteric dynamics for these proteins. Together, these studies help us to understand how dynamins perform mechanical work, as well as how specific mutants of dynamin family proteins exhibit pathogenic properties.Entities:
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Year: 2019 PMID: 31365329 PMCID: PMC6743466 DOI: 10.1091/mbc.E16-10-0709
Source DB: PubMed Journal: Mol Biol Cell ISSN: 1059-1524 Impact factor: 4.138
FIGURE 1:Structural rearrangements within the DRP1 molecules upon nucleotide binding: (a) Cyanidioschyzon merolae Dnm1 crystal structure depicts a closed state of a DRP1 molecule. (b) Crystal structure of human DRP1 shows an open GTPase hinge from chain (A) where both the loops that constitute the GTPase hinge were ordered. (c) Cryo-EM structure of DRP1 determined with nucleotide and the MID49 receptor. The G-domain is rotated and loops L1NS and L2S are stabilized and visible. (d) Overlay of DRP1 dimers in the apo state (4BEJ, light shade, Fröhlich et al., 2013), the linear cryo-EM structure (5WP9, solid color), and the ring model (light shade, bent downward), as seen from Kalia et al. (2018), showing the range of movements exhibited by the G-BSE region relative to the stalk. The stalk is kept constant. (e, f) L1NS and L2S stabilization and interaction in dynamin family members: (e) Overlay of the region of the stalk that contains L1NS and L2S—from DRP1 cryo-EM structure (PDB ID: 5WP9), dynamin-3 crystal structure (PDB ID: 53AF), and MxB cryo-EM structure (PDB ID: 5UOT)—to depict the structural conservation of the region across dynamin family members. In each case, L1NS and L2S are stabilized by interdynamin and/or dynamin–receptor contacts. (f) L1NS and L2S mediate interdynamin contacts in the DRP1 cryo-EM structure (PDB ID: 5WP9).
FIGURE 2:Dynamin helices and rings. (a) Left: A continuous dynamin-1 helix arranged on lipid nanotubes, in the presence of GTP-γS (Marks ). Reproduced with permission from Nature Publishing Group. Right: same as left after incubation with 500 µM GTP for 30 min. Note the increase in the helical pitch (arrows) and possible discontinuous helices/rings. (b) DRP1 helical polymers incubated with GTP, leading to an increase in helical pitch (Mears ). Reproduced with permission from Nature Publishing Group. These structures (arrow) could represent helices with a very elongated pitch, or rings of DRP1. (c) Rings of MxA observed on a lipid template, as seen in Kochs ; Haller et al. (2010). Reproduced with permission from Academic Press and ASBMB. (d) A model for dynamin-1–based membrane fission, as described by Kong . Reproduced with permission from Nature Publishing Group. (e) Models for rings of DRP1 (Kalia ) and (f) of MxA (Haller ). Reproduced with permission from ASBMB.