Literature DB >> 21927001

The crystal structure of dynamin.

Marijn G J Ford1, Simon Jenni, Jodi Nunnari.   

Abstract

Dynamin-related proteins (DRPs) are multi-domain GTPases that function via oligomerization and GTP-dependent conformational changes to play central roles in regulating membrane structure across phylogenetic kingdoms. How DRPs harness self-assembly and GTP-dependent conformational changes to remodel membranes is not understood. Here we present the crystal structure of an assembly-deficient mammalian endocytic DRP, dynamin 1, lacking the proline-rich domain, in its nucleotide-free state. The dynamin 1 monomer is an extended structure with the GTPase domain and bundle signalling element positioned on top of a long helical stalk with the pleckstrin homology domain flexibly attached on its opposing end. Dynamin 1 dimer and higher order dimer multimers form via interfaces located in the stalk. Analysis of these interfaces provides insight into DRP family member specificity and regulation and provides a framework for understanding the biogenesis of higher order DRP structures and the mechanism of DRP-mediated membrane scission events.
© 2011 Macmillan Publishers Limited. All rights reserved

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Year:  2011        PMID: 21927001      PMCID: PMC4075756          DOI: 10.1038/nature10441

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  42 in total

1.  GTPase activity of dynamin and resulting conformation change are essential for endocytosis.

Authors:  B Marks; M H Stowell; Y Vallis; I G Mills; A Gibson; C R Hopkins; H T McMahon
Journal:  Nature       Date:  2001-03-08       Impact factor: 49.962

2.  Crystal structure of a dynamin GTPase domain in both nucleotide-free and GDP-bound forms.

Authors:  H H Niemann; M L Knetsch; A Scherer; D J Manstein; F J Kull
Journal:  EMBO J       Date:  2001-11-01       Impact factor: 11.598

Review 3.  The dynamin superfamily: universal membrane tubulation and fission molecules?

Authors:  Gerrit J K Praefcke; Harvey T McMahon
Journal:  Nat Rev Mol Cell Biol       Date:  2004-02       Impact factor: 94.444

4.  An assembly-incompetent mutant establishes a requirement for dynamin self-assembly in clathrin-mediated endocytosis in vivo.

Authors:  Byeong Doo Song; Defne Yarar; Sandra L Schmid
Journal:  Mol Biol Cell       Date:  2004-03-05       Impact factor: 4.138

5.  Rapid constriction of lipid bilayers by the mechanochemical enzyme dynamin.

Authors:  Dganit Danino; Kwan-Hoon Moon; Jenny E Hinshaw
Journal:  J Struct Biol       Date:  2004-09       Impact factor: 2.867

6.  Nucleotide-dependent conformational changes in dynamin: evidence for a mechanochemical molecular spring.

Authors:  M H Stowell; B Marks; P Wigge; H T McMahon
Journal:  Nat Cell Biol       Date:  1999-05       Impact factor: 28.824

7.  Structures of the atlastin GTPase provide insight into homotypic fusion of endoplasmic reticulum membranes.

Authors:  Xin Bian; Robin W Klemm; Tina Y Liu; Miao Zhang; Sha Sun; Xuewu Sui; Xinqi Liu; Tom A Rapoport; Junjie Hu
Journal:  Proc Natl Acad Sci U S A       Date:  2011-02-22       Impact factor: 11.205

8.  Determination of molecular weights and frictional ratios of proteins in impure systems by use of gel filtration and density gradient centrifugation. Application to crude preparations of sulfite and hydroxylamine reductases.

Authors:  L M Siegel; K J Monty
Journal:  Biochim Biophys Acta       Date:  1966-02-07

9.  Possible temperature-dependent blockage of synaptic vesicle recycling induced by a single gene mutation in Drosophila.

Authors:  T Kosaka; K Ikeda
Journal:  J Neurobiol       Date:  1983-05

10.  Three-dimensional reconstruction of dynamin in the constricted state.

Authors:  P Zhang; J E Hinshaw
Journal:  Nat Cell Biol       Date:  2001-10       Impact factor: 28.824

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  123 in total

Review 1.  Cell signaling and mitochondrial dynamics: Implications for neuronal function and neurodegenerative disease.

Authors:  Theodore J Wilson; Andrew M Slupe; Stefan Strack
Journal:  Neurobiol Dis       Date:  2012-01-24       Impact factor: 5.996

2.  Identification of CSPα clients reveals a role in dynamin 1 regulation.

Authors:  Yong-Quan Zhang; Michael X Henderson; Christopher M Colangelo; Stephen D Ginsberg; Can Bruce; Terence Wu; Sreeganga S Chandra
Journal:  Neuron       Date:  2012-04-12       Impact factor: 17.173

Review 3.  Synaptic vesicle endocytosis.

Authors:  Yasunori Saheki; Pietro De Camilli
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-09-01       Impact factor: 10.005

4.  Reduced release probability prevents vesicle depletion and transmission failure at dynamin mutant synapses.

Authors:  Xuelin Lou; Fan Fan; Mirko Messa; Andrea Raimondi; Yumei Wu; Loren L Looger; Shawn M Ferguson; Pietro De Camilli
Journal:  Proc Natl Acad Sci U S A       Date:  2012-01-30       Impact factor: 11.205

5.  Identification and function of conformational dynamics in the multidomain GTPase dynamin.

Authors:  Saipraveen Srinivasan; Venkatasubramanian Dharmarajan; Dana Kim Reed; Patrick R Griffin; Sandra L Schmid
Journal:  EMBO J       Date:  2016-01-18       Impact factor: 11.598

Review 6.  Building a fission machine--structural insights into dynamin assembly and activation.

Authors:  Joshua S Chappie; Fred Dyda
Journal:  J Cell Sci       Date:  2013-06-18       Impact factor: 5.285

7.  A mutation associated with centronuclear myopathy enhances the size and stability of dynamin 2 complexes in cells.

Authors:  Nicholas G James; Michelle A Digman; Justin A Ross; Barbara Barylko; Lei Wang; Jinhui Li; Yan Chen; Joachim D Mueller; Enrico Gratton; Joseph P Albanesi; David M Jameson
Journal:  Biochim Biophys Acta       Date:  2013-09-07

Review 8.  In vivo functions of Drp1: lessons learned from yeast genetics and mouse knockouts.

Authors:  Hiromi Sesaki; Yoshihiro Adachi; Yusuke Kageyama; Kie Itoh; Miho Iijima
Journal:  Biochim Biophys Acta       Date:  2013-12-08

Review 9.  Mitochondrial morphology-emerging role in bioenergetics.

Authors:  Chad A Galloway; Hakjoo Lee; Yisang Yoon
Journal:  Free Radic Biol Med       Date:  2012-09-29       Impact factor: 7.376

10.  Structural insights into oligomerization and mitochondrial remodelling of dynamin 1-like protein.

Authors:  Chris Fröhlich; Stefan Grabiger; David Schwefel; Katja Faelber; Eva Rosenbaum; Jason Mears; Oliver Rocks; Oliver Daumke
Journal:  EMBO J       Date:  2013-04-12       Impact factor: 11.598

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