Literature DB >> 29082290

In vitro Assays for Eukaryotic Leading/Lagging Strand DNA Replication.

Grant Schauer1, Jeff Finkelstein1, Mike O'Donnell1.   

Abstract

The eukaryotic replisome is a multiprotein complex that duplicates DNA. The replisome is sculpted to couple continuous leading strand synthesis with discontinuous lagging strand synthesis, primarily carried out by DNA polymerases ε and δ, respectively, along with helicases, polymerase α-primase, DNA sliding clamps, clamp loaders and many other proteins. We have previously established the mechanisms by which the polymerases ε and δ are targeted to their 'correct' strands, as well as quality control mechanisms that evict polymerases when they associate with an 'incorrect' strand. Here, we provide a practical guide to differentially assay leading and lagging strand replication in vitro using pure proteins.

Entities:  

Keywords:  CMG helicase; DNA polymerase; Eukaryotic DNA replication; Lagging strand; Leading strand; PCNA sliding clamp; RFC clamp loader; Replisome assay

Year:  2017        PMID: 29082290      PMCID: PMC5659624          DOI: 10.21769/BioProtoc.2548

Source DB:  PubMed          Journal:  Bio Protoc        ISSN: 2331-8325


  7 in total

1.  CMG helicase and DNA polymerase ε form a functional 15-subunit holoenzyme for eukaryotic leading-strand DNA replication.

Authors:  Lance D Langston; Dan Zhang; Olga Yurieva; Roxana E Georgescu; Jeff Finkelstein; Nina Y Yao; Chiara Indiani; Mike E O'Donnell
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-13       Impact factor: 11.205

2.  Quality control mechanisms exclude incorrect polymerases from the eukaryotic replication fork.

Authors:  Grant D Schauer; Michael E O'Donnell
Journal:  Proc Natl Acad Sci U S A       Date:  2017-01-09       Impact factor: 11.205

3.  Mechanism of asymmetric polymerase assembly at the eukaryotic replication fork.

Authors:  Roxana E Georgescu; Lance Langston; Nina Y Yao; Olga Yurieva; Dan Zhang; Jeff Finkelstein; Tani Agarwal; Mike E O'Donnell
Journal:  Nat Struct Mol Biol       Date:  2014-07-06       Impact factor: 15.369

4.  DNA polymerase delta is highly processive with proliferating cell nuclear antigen and undergoes collision release upon completing DNA.

Authors:  Lance D Langston; Mike O'Donnell
Journal:  J Biol Chem       Date:  2008-07-16       Impact factor: 5.157

5.  Reconstitution of a eukaryotic replisome reveals suppression mechanisms that define leading/lagging strand operation.

Authors:  Roxana E Georgescu; Grant D Schauer; Nina Y Yao; Lance D Langston; Olga Yurieva; Dan Zhang; Jeff Finkelstein; Mike E O'Donnell
Journal:  Elife       Date:  2015-04-14       Impact factor: 8.140

6.  A solution to release twisted DNA during chromosome replication by coupled DNA polymerases.

Authors:  Isabel Kurth; Roxana E Georgescu; Mike E O'Donnell
Journal:  Nature       Date:  2013-03-27       Impact factor: 49.962

7.  Resolving individual steps of Okazaki-fragment maturation at a millisecond timescale.

Authors:  Joseph L Stodola; Peter M Burgers
Journal:  Nat Struct Mol Biol       Date:  2016-04-11       Impact factor: 15.369

  7 in total
  4 in total

1.  Replication Fork Activation Is Enabled by a Single-Stranded DNA Gate in CMG Helicase.

Authors:  Michael R Wasserman; Grant D Schauer; Michael E O'Donnell; Shixin Liu
Journal:  Cell       Date:  2019-07-25       Impact factor: 41.582

2.  Visualization of uracils created by APOBEC3A using UdgX shows colocalization with RPA at stalled replication forks.

Authors:  Jessica A Stewart; Grant Schauer; Ashok S Bhagwat
Journal:  Nucleic Acids Res       Date:  2020-11-18       Impact factor: 16.971

3.  Nuclease dead Cas9 is a programmable roadblock for DNA replication.

Authors:  Kelsey S Whinn; Gurleen Kaur; Jacob S Lewis; Grant D Schauer; Stefan H Mueller; Slobodan Jergic; Hamish Maynard; Zhong Yan Gan; Matharishwan Naganbabu; Marcel P Bruchez; Michael E O'Donnell; Nicholas E Dixon; Antoine M van Oijen; Harshad Ghodke
Journal:  Sci Rep       Date:  2019-09-16       Impact factor: 4.379

4.  Replisome bypass of a protein-based R-loop block by Pif1.

Authors:  Grant D Schauer; Lisanne M Spenkelink; Jacob S Lewis; Olga Yurieva; Stefan H Mueller; Antoine M van Oijen; Michael E O'Donnell
Journal:  Proc Natl Acad Sci U S A       Date:  2020-11-16       Impact factor: 11.205

  4 in total

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