Literature DB >> 33550681

Beyond history and "on a roll": The list of the most well-studied human protein structures and overall trends in the protein data bank.

Zhen-Lu Li1, Matthias Buck1,2.   

Abstract

Of the roughly 20,000 canonical human protein sequences, as of January 20, 2021, 7,077 proteins have had their full or partial, medium- to high-resolution structures determined by x-ray crystallography or other methods. Which of these proteins dominate the protein data bank (the PDB) and why? In this paper, we list the 273 top human protein structures based on the number of their PDB entries. This set of proteins accounts for more than 40% of all available human PDB entries and represent past trends as well as current status for protein structural biology. We briefly discuss the relationship which some of the prominent protein structures have with protein research as a whole and mention their relevance to human diseases. The top-10 soluble and membrane proteins are all well-known (most of their first structures being deposited more than 30 years ago). Overall, there is no dramatic change in recent trends in the PDB. Remarkably, the number of structure depositions has grown nearly exponentially over the last 10 or more years (with a doubling time of 7 years for proteins, obtained from any organism). Growth in human protein structures is slightly faster (at 5.9 years). The information in this paper may be informative to senior scientists but also inspire researchers who are new to protein science, providing the year 2021 snap-shot for the state of protein structural biology.
© 2021 The Protein Society.

Entities:  

Keywords:  cancer; human disease; human membrane proteins; protein kinase; protein structures of model organisms; structural biology

Mesh:

Substances:

Year:  2021        PMID: 33550681      PMCID: PMC7980527          DOI: 10.1002/pro.4038

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  86 in total

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2.  Biophysical mechanisms for large-effect mutations in the evolution of steroid hormone receptors.

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3.  Too many roads not taken.

Authors:  Aled M Edwards; Ruth Isserlin; Gary D Bader; Stephen V Frye; Timothy M Willson; Frank H Yu
Journal:  Nature       Date:  2011-02-10       Impact factor: 49.962

4.  'It will change everything': DeepMind's AI makes gigantic leap in solving protein structures.

Authors:  Ewen Callaway
Journal:  Nature       Date:  2020-12       Impact factor: 49.962

Review 5.  Structural mass spectrometry comes of age: new insight into protein structure, function and interactions.

Authors:  Timothy M Allison; Cherine Bechara
Journal:  Biochem Soc Trans       Date:  2019-01-15       Impact factor: 5.407

Review 6.  Insulin receptor signaling in normal and insulin-resistant states.

Authors:  Jérémie Boucher; André Kleinridders; C Ronald Kahn
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-01-01       Impact factor: 10.005

Review 7.  Mechanisms of estrogen action.

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Journal:  Physiol Rev       Date:  2001-10       Impact factor: 37.312

8.  Mechanism of CDK activation revealed by the structure of a cyclinA-CDK2 complex.

Authors:  P D Jeffrey; A A Russo; K Polyak; E Gibbs; J Hurwitz; J Massagué; N P Pavletich
Journal:  Nature       Date:  1995-07-27       Impact factor: 49.962

9.  The refined 1.9 A crystal structure of human alpha-thrombin: interaction with D-Phe-Pro-Arg chloromethylketone and significance of the Tyr-Pro-Pro-Trp insertion segment.

Authors:  W Bode; I Mayr; U Baumann; R Huber; S R Stone; J Hofsteenge
Journal:  EMBO J       Date:  1989-11       Impact factor: 11.598

10.  Protein Data Bank: the single global archive for 3D macromolecular structure data.

Authors: 
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971

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  1 in total

Review 1.  Beyond history and "on a roll": The list of the most well-studied human protein structures and overall trends in the protein data bank.

Authors:  Zhen-Lu Li; Matthias Buck
Journal:  Protein Sci       Date:  2021-03-04       Impact factor: 6.725

  1 in total

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