| Literature DB >> 31331104 |
Giovanna Fusco1, Aniello Anastasio2, David H Kingsley3, Maria Grazia Amoroso1, Tiziana Pepe2, Pina M Fratamico4, Barbara Cioffi1, Rachele Rossi1, Giuseppina La Rosa5, Federica Boccia6.
Abstract
To assess the quality of shellfish harvest areas, bivalve mollusk samples from three coastal areas of the Campania region in Southwest Italy were evaluated for viruses over a three-year period (2015-2017). Screening of 289 samples from shellfish farms and other locations by qPCR and RT-qPCR identified hepatitis A virus (HAV; 8.9%), norovirus GI (NoVGI; 10.8%) and GII (NoVGII; 39.7%), rotavirus (RV; 9.0%), astrovirus (AsV; 20.8%), sapovirus (SaV; 18.8%), aichivirus-1 (AiV-1; 5.6%), and adenovirus (AdV, 5.6%). Hepatitis E virus (HEV) was never detected. Sequence analysis identified HAV as genotype IA and AdV as type 41. This study demonstrates the presence of different enteric viruses within bivalve mollusks, highlighting the limitations of the current EU classification system for shellfish growing waters.Entities:
Keywords: HAV; enteric viruses; molecular methods; mollusks
Mesh:
Year: 2019 PMID: 31331104 PMCID: PMC6678136 DOI: 10.3390/ijerph16142588
Source DB: PubMed Journal: Int J Environ Res Public Health ISSN: 1660-4601 Impact factor: 3.390
Sample collection sites.
| Collection Area | Number of Samples Collected | Percentage of Samples Collected (%) |
|---|---|---|
| ASL Na 1 Centre | 27 | 9.4 |
| ASL Na 2 North | 201 | 70.0 |
| ASL Na 3 South | 56 | 19.9 |
| Collection area not indicated | 3 | 1.0 |
Figure 1Shellfish sampling area (Campania region: Southeast Italy). The sampling areas are indicated by yellow dots.
Classification of shellfish samples (as defined from Reg CE 854/2004).
| Classification | Number of Samples Analyzed | Percentage of Samples Analyzed (%) |
|---|---|---|
| Class A 1 | 46 | 16.0 |
| Class B 2 | 237 | 82.1 |
| Class C 3 | 1 | 0.3 |
| Natural banks 4 | 5 | 1.7 |
1 Class A: minimum of 10 samples required per year: 80% of sample results must be less than or equal to 230 E. coli/100 g and no results may exceed 700 E. coli/100 g. 2 Class B: minimum of eight samples required per year: 90% of sample results must be less than or equal to 4600 E. coli/100 g and no results may exceed 46,000 E. coli/100 g. 3 Class C: minimum of eight samples required: all sample results must be less than 46,000 E. coli/100 g. 4 Natural banks: Production area not yet classified.
Primers and probes for qPCR and RT-qPCR.
| Target | Primers/Probe Name | Sequence | Reference |
|---|---|---|---|
| HAV | HAV 68 | 5’TCACCGCCGTTTGCCTAG3’ | |
| Primer reverse | HAV 240 | 5’GGAGAGCCCTGGAAGAAAG3’ | [ |
| Probe | HAV 150 FAM | 5’CCTGAACCTGCAGGAATTAA-3’-MGB/NFQ | |
| NOROVIRUS GI | |||
| Primer forward | NGI QNIF4 | 5’-CGCTGGATGCGNTTCCAT-3’ | |
| Primer reverse | NGI NV1LCR | 5’CCTTAGACGCCATCATCATTTAC3’ | [ |
| Probe | NVGG1P-FAM | 5’TGGACAGGAGAYCGCRATCT3’TAMRA | |
| NOROVIRUS GII | |||
| Primer forward | NGII QNIF2 | 5’ATGTTCAGRTGGATGAGRTTCTCWGA-3’ | |
| Primer reverse | NGII COG2R | 5’-TCGACGCCATCTTCATTCACA-3’ | [ |
| Probe | NGII QNIF FAM | 5’-AGCACGTGGGAGGGCGATCG-3’TAMRA | |
| HEV | |||
| Primer forward | JVHEV1 | 5’-GGTGGTTTCTGGGGTGAC-3’ | |
| Primer reverse | JVHEV2 | 5’-AGGGGTTGGTTGGATGAA-3’ | [ |
| Probe | JVHEV P-FAM | 5’-TGATTCTCAGCCCTTCGC-3’TAMRA | |
| AICHIVIRUS | |||
| Primer forward | AiV-AB-F | 5’-GTCTCCACHGACACYAAYTGGAC-3’ | |
| Primer reverse | AiV-AB-R | 5’-GTTGTACATRGCAGCCCAGG-3’ | [ |
| Probe | AiV-AB-TP FAM | 5’-TTYTCCTTYGTGCGTGC- 3’NFQ (MGB) | |
| ROTAVIRUS | |||
| Primer forward | NSP3F | 5’ACCATCTWCACRTRACCCTCTATGAG-3’ | |
| Primer reverse | NSP3R | 5’-GGTCACATAACGCCCCTATAGC-3’ | [ |
| Probe | NSP3P-FAM | 5’-AGTTAAAAGCTAACACTGTCAAA3’(MGB) | |
| SAPOVIRUS | |||
| Primer forward | SAV124F | 5’-GAYCASGCTCTCGCYACCTAC-3’ | |
| Primer reverse | SAV1245R | 5’-CCCTCCATYTCAAACACTA-3’ | [ |
| Probe | SAV124TPFAM | 5’- CCCCTATRAACCA-3’NFQ (MGB) | |
| ADENOVIRUS | |||
| Primer forward | AdV1 | 5’-CWTACATGCACATCKCSGG-3’ | |
| Primer reverse | AdV2 | 5’-CRCGGGCRAAYTGCACCAG-3’ | [ |
| Probe | Advs-FAM | 5’CCGGGCTCAGGTACTCCGAGGCGTCCT-3’ | |
| ASTROVIRUS | |||
| Primer forward | AsV1 | 5’-CCGAGTAGGATCGAGGGT-3’ | |
| Primer reverse | AsV2 | 5’-GCTTCTGATTAAATCAATTTTAA-3’ | [ |
| Probe | AsV FAM | 5’CTTTTCTGTCTCTGTTTAGATTATTTTAATCACC-3’ TAMRA |
HAV = hepatitis A virus; NGI = norovirus GI; NGII = norovirus GII; HEV = hepatitis E virus; AiV = aichivirus; SaV = sapovirus; AdV = adenovirus; AsV = astrovirus; FAM/TAMRA = fluorocrome; MGB = minor groove binder probe.
Positive results in the samples for various targets during the three-year testing period.
| Viruses Detected | 2015 Number of Positive Samples | 2016 Number of Positive Samples | 2017 Number of Positive Samples | Total Positivity over Three Years |
|---|---|---|---|---|
| HAV | 7 (4.7) | 4 (5.1) | 15 (22.7) | 26 (8.9) |
| NoVGI | 6 (4.1) | 7 (9.0) | 18 (28.1) | 31 (10.8) |
| NoVGII | 31 (21.2) | 53 (68.8) | 30 (46.8) | 114 (39.7) |
| RV | 18 (12.3) | 0 (0) | 8 (12.5) | 26 (9.0) |
| SaV | 16 (10.9) | 20 (25.9) | 17 (26.5) | 54 (18.8) |
| AsV | 30 (20.5) | 11 (14.2) | 19 (29.0) | 60 (20.8) |
| AiV | 9 (6.1) | 2 (2.6) | 5 (7.8) | 16 (5.5) |
| AdV | 4 (2.7) | 6 (7.7) | 6 (9.3) | 16 (5.5) |
| HEV | 0 (0) | 0 (0) | 0 (0) | 0 (0) |
| Total samples analyzed | 146 | 77 | 66 | 289 |
RV = rotavirus.
Sample positivity.
| Positivity of Samples | Number of Positive Samples | Percentage of Samples out of the Total Positive (%) |
|---|---|---|
| Positivity for one target | 60 | 37.7 |
| Positivity for at least two targets | 99 | 62.2 |
| Total positivity | 159 | 55.0 |
Seasonal trend for virus positive samples from 2015 to 2017.
| Month | Virus Positivity | HAV | NoVGI | NoVGII | RV | SaV | AsV | AiV | AdV |
|---|---|---|---|---|---|---|---|---|---|
| Jan. | 23/28 (82.1) | 25 | 12.9 | 20.1 | 0 | 12.9 | 10 | 25 | 3.7 |
| Feb. | 22/23 (95.6) | 3.8 | 29.0 | 17.5 | 7.6 | 1.8 | 26.6 | 18.7 | 18.7 |
| Mar. | 18/26 (69.2) | 11.5 | 9.6 | 8.7 | 0 | 12.9 | 20 | 12.5 | 6.2 |
| Apr. | 33/44 (75) | 23.0 | 19.3 | 21.9 | 15.3 | 11.1 | 30 | 18.7 | 6.2 |
| May | 14/24 (58.3) | 11.5 | 9.6 | 8.7 | 15.3 | 5.5 | 10 | 6.2 | 0 |
| Jun. | 3/4 (75) | 0 | 0 | 1 | 0 | 0 | 1.6 | 0 | 0 |
| Jul. | 8/33 (24.2) | 0 | 6.4 | 1.7 | 7.6 | 5.5 | 1.6 | 0 | 0 |
| Aug. | 0/13 (0) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Sept. | 9/27 (33.3) | 0 | 6.4 | 0 | 26.9 | 5.5 | 0 | 0 | 6.2 |
| Oct. | 0/18 (0) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Nov. | 8/18 (44.4) | 0 | 9.6 | 2.6 | 11.5 | 3.7 | 0 | 0 | 0 |
| Dec. | 22/28 (78.5) | 15.3 | 64.5 | 17.5 | 15.3 | 11.1 | 5 | 25 | 25 |
Virus positivity among different sampling class areas.
| Classification | Number of Samples Analyzed | Number of Positive Samples | Virus Identified |
|---|---|---|---|
| Class A | 46 | 20 | HAV, NoVGI, NoVGII, RV, AsV, SaV, Adv. |
| Class B | 237 | 136 | HAV, NoVGI, NoVGII, RV, AsV, SaV, Adv, AiV |
| Class C | 1 | 1 | HAV, NoVGI, NoVGII, RV, AsV, SaV, Adv, AiV |
| Natural banks | 5 | 2 | HAV, NoVGI, NoVGII, RV, AsV, SaV, Adv, AiV |