Literature DB >> 31283446

Regulation of Viral Infection by the RNA Modification N6-Methyladenosine.

Graham D Williams1, Nandan S Gokhale1, Stacy M Horner1,2.   

Abstract

In recent years, the RNA modification N6-methyladenosine (m6A) has been found to play a role in the life cycles of numerous viruses and also in the cellular response to viral infection. m6A has emerged as a regulator of many fundamental aspects of RNA biology. Here, we highlight recent advances in techniques for the study of m6A, as well as advances in our understanding of the cellular machinery that controls the addition, removal, recognition, and functions of m6A. We then summarize the many newly discovered roles of m6A during viral infection, including how it regulates innate and adaptive immune responses to infection. Overall, the goals of this review are to summarize the roles of m6A on both cellular and viral RNAs and to describe future directions for uncovering new functions of m6A during infection.

Entities:  

Keywords:  DNA viruses; N6-methyladenosine; RNA modifications; RNA viruses; innate immunity; m6A; post-transcriptional regulation

Mesh:

Substances:

Year:  2019        PMID: 31283446      PMCID: PMC6884077          DOI: 10.1146/annurev-virology-092818-015559

Source DB:  PubMed          Journal:  Annu Rev Virol        ISSN: 2327-056X            Impact factor:   10.431


  151 in total

1.  Suppression of RNA recognition by Toll-like receptors: the impact of nucleoside modification and the evolutionary origin of RNA.

Authors:  Katalin Karikó; Michael Buckstein; Houping Ni; Drew Weissman
Journal:  Immunity       Date:  2005-08       Impact factor: 31.745

2.  Structural Basis for the Discriminative Recognition of N6-Methyladenosine RNA by the Human YT521-B Homology Domain Family of Proteins.

Authors:  Chao Xu; Ke Liu; Hazem Ahmed; Peter Loppnau; Matthieu Schapira; Jinrong Min
Journal:  J Biol Chem       Date:  2015-08-28       Impact factor: 5.157

3.  Ythdc2 is an N6-methyladenosine binding protein that regulates mammalian spermatogenesis.

Authors:  Phillip J Hsu; Yunfei Zhu; Honghui Ma; Yueshuai Guo; Xiaodan Shi; Yuanyuan Liu; Meijie Qi; Zhike Lu; Hailing Shi; Jianying Wang; Yiwei Cheng; Guanzheng Luo; Qing Dai; Mingxi Liu; Xuejiang Guo; Jiahao Sha; Bin Shen; Chuan He
Journal:  Cell Res       Date:  2017-08-15       Impact factor: 25.617

Review 4.  The pivotal regulatory landscape of RNA modifications.

Authors:  Sheng Li; Christopher E Mason
Journal:  Annu Rev Genomics Hum Genet       Date:  2014-06-02       Impact factor: 8.929

5.  Widespread occurrence of 5-methylcytosine in human coding and non-coding RNA.

Authors:  Jeffrey E Squires; Hardip R Patel; Marco Nousch; Tennille Sibbritt; David T Humphreys; Brian J Parker; Catherine M Suter; Thomas Preiss
Journal:  Nucleic Acids Res       Date:  2012-02-16       Impact factor: 16.971

6.  Single-nucleotide-resolution mapping of m6A and m6Am throughout the transcriptome.

Authors:  Bastian Linder; Anya V Grozhik; Anthony O Olarerin-George; Cem Meydan; Christopher E Mason; Samie R Jaffrey
Journal:  Nat Methods       Date:  2015-06-29       Impact factor: 28.547

7.  The conserved RNA helicase YTHDC2 regulates the transition from proliferation to differentiation in the germline.

Authors:  Alexis S Bailey; Pedro J Batista; Rebecca S Gold; Y Grace Chen; Dirk G de Rooij; Howard Y Chang; Margaret T Fuller
Journal:  Elife       Date:  2017-10-31       Impact factor: 8.140

8.  RMBase v2.0: deciphering the map of RNA modifications from epitranscriptome sequencing data.

Authors:  Jia-Jia Xuan; Wen-Ju Sun; Peng-Hui Lin; Ke-Ren Zhou; Shun Liu; Ling-Ling Zheng; Liang-Hu Qu; Jian-Hua Yang
Journal:  Nucleic Acids Res       Date:  2018-01-04       Impact factor: 16.971

Review 9.  Making the Mark: The Role of Adenosine Modifications in the Life Cycle of RNA Viruses.

Authors:  Sarah R Gonzales-van Horn; Peter Sarnow
Journal:  Cell Host Microbe       Date:  2017-06-14       Impact factor: 21.023

10.  Zc3h13/Flacc is required for adenosine methylation by bridging the mRNA-binding factor Rbm15/Spenito to the m6A machinery component Wtap/Fl(2)d.

Authors:  Philip Knuckles; Tina Lence; Irmgard U Haussmann; Dominik Jacob; Nastasja Kreim; Sarah H Carl; Irene Masiello; Tina Hares; Rodrigo Villaseñor; Daniel Hess; Miguel A Andrade-Navarro; Marco Biggiogera; Mark Helm; Matthias Soller; Marc Bühler; Jean-Yves Roignant
Journal:  Genes Dev       Date:  2018-03-13       Impact factor: 11.361

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  42 in total

1.  Occurrence and Functions of m6A and Other Covalent Modifications in Plant mRNA.

Authors:  Laura Arribas-Hernández; Peter Brodersen
Journal:  Plant Physiol       Date:  2019-11-20       Impact factor: 8.340

2.  FTO Suppresses STAT3 Activation and Modulates Proinflammatory Interferon-Stimulated Gene Expression.

Authors:  Michael J McFadden; Matthew T Sacco; Kristen A Murphy; Moonhee Park; Nandan S Gokhale; Kim Y Somfleth; Stacy M Horner
Journal:  J Mol Biol       Date:  2021-09-16       Impact factor: 5.469

Review 3.  RNA regulatory mechanisms that control antiviral innate immunity.

Authors:  Nandan S Gokhale; Julian R Smith; Rachel D Van Gelder; Ram Savan
Journal:  Immunol Rev       Date:  2021-08-17       Impact factor: 12.988

Review 4.  Flipping the script: viral capitalization of RNA modifications.

Authors:  Matthew T Sacco; Stacy M Horner
Journal:  Brief Funct Genomics       Date:  2021-03-27       Impact factor: 4.241

Review 5.  N6-Methyladenosine Regulates Host Responses to Viral Infection.

Authors:  Michael J McFadden; Stacy M Horner
Journal:  Trends Biochem Sci       Date:  2020-12-09       Impact factor: 13.807

6.  SARS-CoV-2 gene content and COVID-19 mutation impact by comparing 44 Sarbecovirus genomes.

Authors:  Irwin Jungreis; Rachel Sealfon; Manolis Kellis
Journal:  Nat Commun       Date:  2021-05-11       Impact factor: 14.919

Review 7.  RNA Epigenetics: Fine-Tuning Chromatin Plasticity and Transcriptional Regulation, and the Implications in Human Diseases.

Authors:  Amber Willbanks; Shaun Wood; Jason X Cheng
Journal:  Genes (Basel)       Date:  2021-04-22       Impact factor: 4.096

Review 8.  RNA Methylation in Systemic Lupus Erythematosus.

Authors:  Xinyi Lv; Xiaomin Liu; Ming Zhao; Haijing Wu; Wuiguang Zhang; Qianjin Lu; Xiangmei Chen
Journal:  Front Cell Dev Biol       Date:  2021-07-07

Review 9.  The RNA modification N6-methyladenosine as a novel regulator of the immune system.

Authors:  Ziv Shulman; Noam Stern-Ginossar
Journal:  Nat Immunol       Date:  2020-04-13       Impact factor: 25.606

Review 10.  m6 A RNA methylation: from mechanisms to therapeutic potential.

Authors:  P Cody He; Chuan He
Journal:  EMBO J       Date:  2021-01-20       Impact factor: 11.598

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