Literature DB >> 31280963

Dynamic Risk Profiling Using Serial Tumor Biomarkers for Personalized Outcome Prediction.

David M Kurtz1, Mohammad S Esfahani2, Florian Scherer2, Joanne Soo2, Michael C Jin2, Chih Long Liu2, Aaron M Newman3, Ulrich Dührsen4, Andreas Hüttmann4, Olivier Casasnovas5, Jason R Westin6, Matthais Ritgen7, Sebastian Böttcher8, Anton W Langerak9, Mark Roschewski10, Wyndham H Wilson10, Gianluca Gaidano11, Davide Rossi12, Jasmin Bahlo13, Michael Hallek14, Robert Tibshirani15, Maximilian Diehn16, Ash A Alizadeh17.   

Abstract

Accurate prediction of long-term outcomes remains a challenge in the care of cancer patients. Due to the difficulty of serial tumor sampling, previous prediction tools have focused on pretreatment factors. However, emerging non-invasive diagnostics have increased opportunities for serial tumor assessments. We describe the Continuous Individualized Risk Index (CIRI), a method to dynamically determine outcome probabilities for individual patients utilizing risk predictors acquired over time. Similar to "win probability" models in other fields, CIRI provides a real-time probability by integrating risk assessments throughout a patient's course. Applying CIRI to patients with diffuse large B cell lymphoma, we demonstrate improved outcome prediction compared to conventional risk models. We demonstrate CIRI's broader utility in analogous models of chronic lymphocytic leukemia and breast adenocarcinoma and perform a proof-of-concept analysis demonstrating how CIRI could be used to develop predictive biomarkers for therapy selection. We envision that dynamic risk assessment will facilitate personalized medicine and enable innovative therapeutic paradigms.
Copyright © 2019. Published by Elsevier Inc.

Entities:  

Keywords:  biomarkers; cancer; liquid biopsy; personalized medicine; predictive modeling

Mesh:

Substances:

Year:  2019        PMID: 31280963      PMCID: PMC7380118          DOI: 10.1016/j.cell.2019.06.011

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  74 in total

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Authors:  M Hallek; K Fischer; G Fingerle-Rowson; A M Fink; R Busch; J Mayer; M Hensel; G Hopfinger; G Hess; U von Grünhagen; M Bergmann; J Catalano; P L Zinzani; F Caligaris-Cappio; J F Seymour; A Berrebi; U Jäger; B Cazin; M Trneny; A Westermann; C M Wendtner; B F Eichhorst; P Staib; A Bühler; D Winkler; T Zenz; S Böttcher; M Ritgen; M Mendila; M Kneba; H Döhner; S Stilgenbauer
Journal:  Lancet       Date:  2010-10-02       Impact factor: 79.321

2.  Rituximab-dose-dense chemotherapy with or without high-dose chemotherapy plus autologous stem-cell transplantation in high-risk diffuse large B-cell lymphoma (DLCL04): final results of a multicentre, open-label, randomised, controlled, phase 3 study.

Authors:  Annalisa Chiappella; Maurizio Martelli; Emanuele Angelucci; Ercole Brusamolino; Andrea Evangelista; Angelo Michele Carella; Caterina Stelitano; Giuseppe Rossi; Monica Balzarotti; Francesco Merli; Gianluca Gaidano; Vincenzo Pavone; Luigi Rigacci; Francesco Zaja; Alfonso D'Arco; Nicola Cascavilla; Eleonora Russo; Alessia Castellino; Manuel Gotti; Angela Giovanna Congiu; Maria Giuseppina Cabras; Alessandra Tucci; Claudio Agostinelli; Giovannino Ciccone; Stefano A Pileri; Umberto Vitolo
Journal:  Lancet Oncol       Date:  2017-06-28       Impact factor: 41.316

3.  NCCN Guidelines Insights: Chronic Lymphocytic Leukemia/Small Lymphocytic Lymphoma, Version 1.2017.

Authors:  William G Wierda; Andrew D Zelenetz; Leo I Gordon; Jeremy S Abramson; Ranjana H Advani; C Babis Andreadis; Nancy Bartlett; John C Byrd; Paolo Caimi; Luis E Fayad; Richard I Fisher; Martha J Glenn; Thomas M Habermann; Nancy Lee Harris; Francisco Hernandez-Ilizaliturri; Richard T Hoppe; Steven M Horwitz; Mark S Kaminski; Christopher R Kelsey; Youn H Kim; Susan Krivacic; Ann S LaCasce; Michael G Martin; Auayporn Nademanee; Pierluigi Porcu; Oliver Press; Rachel Rabinovitch; Nishitha Reddy; Erin Reid; Kenneth Roberts; Ayman A Saad; Erin D Snyder; Lubomir Sokol; Lode J Swinnen; Julie M Vose; Joachim Yahalom; Mary A Dwyer; Hema Sundar
Journal:  J Natl Compr Canc Netw       Date:  2017-03       Impact factor: 11.908

4.  A genomic predictor of response and survival following taxane-anthracycline chemotherapy for invasive breast cancer.

Authors:  Christos Hatzis; Lajos Pusztai; Vicente Valero; Daniel J Booser; Laura Esserman; Ana Lluch; Tatiana Vidaurre; Frankie Holmes; Eduardo Souchon; Hongkun Wang; Miguel Martin; José Cotrina; Henry Gomez; Rebekah Hubbard; J Ignacio Chacón; Jaime Ferrer-Lozano; Richard Dyer; Meredith Buxton; Yun Gong; Yun Wu; Nuhad Ibrahim; Eleni Andreopoulou; Naoto T Ueno; Kelly Hunt; Wei Yang; Arlene Nazario; Angela DeMichele; Joyce O'Shaughnessy; Gabriel N Hortobagyi; W Fraser Symmans
Journal:  JAMA       Date:  2011-05-11       Impact factor: 56.272

5.  Tumour heterogeneity in the clinic.

Authors:  Philippe L Bedard; Aaron R Hansen; Mark J Ratain; Lillian L Siu
Journal:  Nature       Date:  2013-09-19       Impact factor: 49.962

6.  Minimal Residual Disease Assessment Improves Prediction of Outcome in Patients With Chronic Lymphocytic Leukemia (CLL) Who Achieve Partial Response: Comprehensive Analysis of Two Phase III Studies of the German CLL Study Group.

Authors:  Gabor Kovacs; Sandra Robrecht; Anna Maria Fink; Jasmin Bahlo; Paula Cramer; Julia von Tresckow; Christian Maurer; Petra Langerbeins; Günter Fingerle-Rowson; Matthias Ritgen; Michael Kneba; Hartmut Döhner; Stephan Stilgenbauer; Wolfram Klapper; Clemens-Martin Wendtner; Kirsten Fischer; Michael Hallek; Barbara Eichhorst; Sebastian Böttcher
Journal:  J Clin Oncol       Date:  2016-11-01       Impact factor: 44.544

7.  Early Detection of Molecular Residual Disease in Localized Lung Cancer by Circulating Tumor DNA Profiling.

Authors:  Aadel A Chaudhuri; Jacob J Chabon; Alexander F Lovejoy; Aaron M Newman; Henning Stehr; Tej D Azad; Michael S Khodadoust; Mohammad Shahrokh Esfahani; Chih Long Liu; Li Zhou; Florian Scherer; David M Kurtz; Carmen Say; Justin N Carter; David J Merriott; Jonathan C Dudley; Michael S Binkley; Leslie Modlin; Sukhmani K Padda; Michael F Gensheimer; Robert B West; Joseph B Shrager; Joel W Neal; Heather A Wakelee; Billy W Loo; Ash A Alizadeh; Maximilian Diehn
Journal:  Cancer Discov       Date:  2017-09-24       Impact factor: 39.397

8.  Prognostic Significance of Diffuse Large B-Cell Lymphoma Cell of Origin Determined by Digital Gene Expression in Formalin-Fixed Paraffin-Embedded Tissue Biopsies.

Authors:  David W Scott; Anja Mottok; Daisuke Ennishi; George W Wright; Pedro Farinha; Susana Ben-Neriah; Robert Kridel; Garrett S Barry; Christoffer Hother; Pau Abrisqueta; Merrill Boyle; Barbara Meissner; Adele Telenius; Kerry J Savage; Laurie H Sehn; Graham W Slack; Christian Steidl; Louis M Staudt; Joseph M Connors; Lisa M Rimsza; Randy D Gascoyne
Journal:  J Clin Oncol       Date:  2015-08-03       Impact factor: 44.544

9.  Circulating tumor DNA analysis detects minimal residual disease and predicts recurrence in patients with stage II colon cancer.

Authors:  Jeanne Tie; Yuxuan Wang; Cristian Tomasetti; Lu Li; Simeon Springer; Isaac Kinde; Natalie Silliman; Mark Tacey; Hui-Li Wong; Michael Christie; Suzanne Kosmider; Iain Skinner; Rachel Wong; Malcolm Steel; Ben Tran; Jayesh Desai; Ian Jones; Andrew Haydon; Theresa Hayes; Tim J Price; Robert L Strausberg; Luis A Diaz; Nickolas Papadopoulos; Kenneth W Kinzler; Bert Vogelstein; Peter Gibbs
Journal:  Sci Transl Med       Date:  2016-07-06       Impact factor: 17.956

10.  Germline Mutation Status, Pathological Complete Response, and Disease-Free Survival in Triple-Negative Breast Cancer: Secondary Analysis of the GeparSixto Randomized Clinical Trial.

Authors:  Eric Hahnen; Bianca Lederer; Jan Hauke; Sibylle Loibl; Sandra Kröber; Andreas Schneeweiss; Carsten Denkert; Peter A Fasching; Jens U Blohmer; Christian Jackisch; Stefan Paepke; Bernd Gerber; Sherko Kümmel; Christian Schem; Guido Neidhardt; Jens Huober; Kerstin Rhiem; Serban Costa; Janine Altmüller; Claus Hanusch; Holger Thiele; Volkmar Müller; Peter Nürnberg; Thomas Karn; Valentina Nekljudova; Michael Untch; Gunter von Minckwitz; Rita K Schmutzler
Journal:  JAMA Oncol       Date:  2017-10-01       Impact factor: 31.777

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  43 in total

Review 1.  Treatment resistance in diffuse large B-cell lymphoma.

Authors:  Michael Y He; Robert Kridel
Journal:  Leukemia       Date:  2021-05-20       Impact factor: 11.528

Review 2.  Liquid biopsy in lymphoma: Molecular methods and clinical applications.

Authors:  Melita Cirillo; Alexander F M Craig; Sven Borchmann; David M Kurtz
Journal:  Cancer Treat Rev       Date:  2020-09-22       Impact factor: 12.111

3.  Expanding the Precision Medicine Toolkit With Circulating Tumor DNA.

Authors:  Mark Roschewski; Wyndham H Wilson
Journal:  JCO Oncol Pract       Date:  2020-09

4.  Evaluating upfront high-dose consolidation after R-CHOP for follicular lymphoma by clinical and genetic risk models.

Authors:  Stefan Alig; Vindi Jurinovic; Mohammad Shahrokh Esfahani; Sarah Haebe; Verena Passerini; Johannes C Hellmuth; Erik Gaitzsch; William Keay; Natyra Tahiri; Anna Zoellner; Andreas Rosenwald; Wolfram Klapper; Harald Stein; Alfred Feller; German Ott; Annette M Staiger; Heike Horn; Martin L Hansmann; Christiane Pott; Michael Unterhalt; Christian Schmidt; Martin Dreyling; Ash A Alizadeh; Wolfgang Hiddemann; Eva Hoster; Oliver Weigert
Journal:  Blood Adv       Date:  2020-09-22

Review 5.  Remaining challenges in predicting patient outcomes for diffuse large B-cell lymphoma.

Authors:  R Andrew Harkins; Andres Chang; Sharvil P Patel; Michelle J Lee; Jordan S Goldstein; Selin Merdan; Christopher R Flowers; Jean L Koff
Journal:  Expert Rev Hematol       Date:  2019-09-12       Impact factor: 2.929

6.  Prognostic and predictive parameters in breast pathology: a pathologist's primer.

Authors:  Kimberly H Allison
Journal:  Mod Pathol       Date:  2020-11-05       Impact factor: 7.842

Review 7.  Liquid biopsy for pediatric diffuse midline glioma: a review of circulating tumor DNA and cerebrospinal fluid tumor DNA.

Authors:  Tej D Azad; Michael C Jin; Lydia J Bernhardt; Chetan Bettegowda
Journal:  Neurosurg Focus       Date:  2020-01-01       Impact factor: 4.047

Review 8.  Role of Circulating Tumor DNA in Hematological Malignancy.

Authors:  Miho Ogawa; Kazuaki Yokoyama; Seiya Imoto; Arinobu Tojo
Journal:  Cancers (Basel)       Date:  2021-04-25       Impact factor: 6.639

9.  A Phase II Study of Pembrolizumab in Combination with Capecitabine and Oxaliplatin with Molecular Profiling in Patients with Advanced Biliary Tract Carcinoma.

Authors:  Cecilia Monge; Erica C Pehrsson; Changqing Xie; Austin G Duffy; Donna Mabry; Bradford J Wood; David E Kleiner; Seth M Steinberg; William D Figg; Bernadette Redd; Anuradha Budhu; Sophie Wang; Mayank Tandon; Lichun Ma; Xin Wei Wang; Tim F Greten
Journal:  Oncologist       Date:  2022-03-11

10.  Cancer prognosis with shallow tumor RNA sequencing.

Authors:  Pedro Milanez-Almeida; Andrew J Martins; Ronald N Germain; John S Tsang
Journal:  Nat Med       Date:  2020-02-10       Impact factor: 53.440

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