Literature DB >> 31896079

Liquid biopsy for pediatric diffuse midline glioma: a review of circulating tumor DNA and cerebrospinal fluid tumor DNA.

Tej D Azad1, Michael C Jin2, Lydia J Bernhardt1, Chetan Bettegowda1.   

Abstract

Diffuse midline glioma (DMG) is a highly malignant childhood tumor with an exceedingly poor prognosis and limited treatment options. The majority of these tumors harbor somatic mutations in genes encoding histone variants. These recurrent mutations correlate with treatment response and are forming the basis for molecularly guided clinical trials. The ability to detect these mutations, either in circulating tumor DNA (ctDNA) or cerebrospinal fluid tumor DNA (CSF-tDNA), may enable noninvasive molecular profiling and earlier prediction of treatment response. Here, the authors review ctDNA and CSF-tDNA detection methods, detail recent studies that have explored detection of ctDNA and CSF-tDNA in patients with DMG, and discuss the implications of liquid biopsies for patients with DMG.

Entities:  

Keywords:  CNS = central nervous system; CSF = cerebrospinal fluid; CSF-tDNA = CSF tumor DNA; DIPG = diffuse intrinsic pontine glioma; DMG = diffuse midline glioma; GBM = glioblastoma; NGS = next-generation sequencing; PCR = polymerase chain reaction; RT = radiation therapy; VAF = variant allele fraction; WES = whole-exome sequencing; WGS = whole-genome sequencing; cfDNA = cell-free DNA; ctDNA; ctDNA = circulating tumor DNA; ddPCR = droplet digital PCR; diffuse intrinsic pontine glioma; diffuse midline glioma; liquid biopsy

Mesh:

Substances:

Year:  2020        PMID: 31896079      PMCID: PMC7340556          DOI: 10.3171/2019.9.FOCUS19699

Source DB:  PubMed          Journal:  Neurosurg Focus        ISSN: 1092-0684            Impact factor:   4.047


  54 in total

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4.  A pilot precision medicine trial for children with diffuse intrinsic pontine glioma-PNOC003: A report from the Pacific Pediatric Neuro-Oncology Consortium.

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Journal:  Int J Cancer       Date:  2019-04-03       Impact factor: 7.396

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Authors:  Chetan Bettegowda; Mark Sausen; Rebecca J Leary; Isaac Kinde; Yuxuan Wang; Nishant Agrawal; Bjarne R Bartlett; Hao Wang; Brandon Luber; Rhoda M Alani; Emmanuel S Antonarakis; Nilofer S Azad; Alberto Bardelli; Henry Brem; John L Cameron; Clarence C Lee; Leslie A Fecher; Gary L Gallia; Peter Gibbs; Dung Le; Robert L Giuntoli; Michael Goggins; Michael D Hogarty; Matthias Holdhoff; Seung-Mo Hong; Yuchen Jiao; Hartmut H Juhl; Jenny J Kim; Giulia Siravegna; Daniel A Laheru; Calogero Lauricella; Michael Lim; Evan J Lipson; Suely Kazue Nagahashi Marie; George J Netto; Kelly S Oliner; Alessandro Olivi; Louise Olsson; Gregory J Riggins; Andrea Sartore-Bianchi; Kerstin Schmidt; le-Ming Shih; Sueli Mieko Oba-Shinjo; Salvatore Siena; Dan Theodorescu; Jeanne Tie; Timothy T Harkins; Silvio Veronese; Tian-Li Wang; Jon D Weingart; Christopher L Wolfgang; Laura D Wood; Dongmei Xing; Ralph H Hruban; Jian Wu; Peter J Allen; C Max Schmidt; Michael A Choti; Victor E Velculescu; Kenneth W Kinzler; Bert Vogelstein; Nickolas Papadopoulos; Luis A Diaz
Journal:  Sci Transl Med       Date:  2014-02-19       Impact factor: 17.956

6.  Prospective feasibility and safety assessment of surgical biopsy for patients with newly diagnosed diffuse intrinsic pontine glioma.

Authors:  Nalin Gupta; Liliana C Goumnerova; Peter Manley; Susan N Chi; Donna Neuberg; Maneka Puligandla; Jason Fangusaro; Stewart Goldman; Tadanori Tomita; Tord Alden; Arthur DiPatri; Joshua B Rubin; Karen Gauvain; David Limbrick; Jeffrey Leonard; J Russel Geyer; Sarah Leary; Samuel Browd; Zhihong Wang; Sandeep Sood; Anne Bendel; Mahmoud Nagib; Sharon Gardner; Matthias A Karajannis; David Harter; Kanyalakshmi Ayyanar; William Gump; Daniel C Bowers; Bradley Weprin; Tobey J MacDonald; Dolly Aguilera; Barunashish Brahma; Nathan J Robison; Erin Kiehna; Mark Krieger; Eric Sandler; Philipp Aldana; Ziad Khatib; John Ragheb; Sanjiv Bhatia; Sabine Mueller; Anu Banerjee; Amy-Lee Bredlau; Sri Gururangan; Herbert Fuchs; Kenneth J Cohen; George Jallo; Kathleen Dorris; Michael Handler; Melanie Comito; Mark Dias; Kellie Nazemi; Lissa Baird; Jeff Murray; Neal Lindeman; Jason L Hornick; Hayley Malkin; Claire Sinai; Lianne Greenspan; Karen D Wright; Michael Prados; Pratiti Bandopadhayay; Keith L Ligon; Mark W Kieran
Journal:  Neuro Oncol       Date:  2018-10-09       Impact factor: 12.300

7.  Clinical targeted exome-based sequencing in combination with genome-wide copy number profiling: precision medicine analysis of 203 pediatric brain tumors.

Authors:  Shakti H Ramkissoon; Pratiti Bandopadhayay; Jaeho Hwang; Lori A Ramkissoon; Noah F Greenwald; Steven E Schumacher; Ryan O'Rourke; Nathan Pinches; Patricia Ho; Hayley Malkin; Claire Sinai; Mariella Filbin; Ashley Plant; Wenya Linda Bi; Michael S Chang; Edward Yang; Karen D Wright; Peter E Manley; Matthew Ducar; Sanda Alexandrescu; Hart Lidov; Ivana Delalle; Liliana C Goumnerova; Alanna J Church; Katherine A Janeway; Marian H Harris; Laura E MacConaill; Rebecca D Folkerth; Neal I Lindeman; Charles D Stiles; Mark W Kieran; Azra H Ligon; Sandro Santagata; Adrian M Dubuc; Susan N Chi; Rameen Beroukhim; Keith L Ligon
Journal:  Neuro Oncol       Date:  2017-07-01       Impact factor: 12.300

8.  Somatic histone H3 alterations in pediatric diffuse intrinsic pontine gliomas and non-brainstem glioblastomas.

Authors:  Gang Wu; Alberto Broniscer; Troy A McEachron; Charles Lu; Barbara S Paugh; Jared Becksfort; Chunxu Qu; Li Ding; Robert Huether; Matthew Parker; Junyuan Zhang; Amar Gajjar; Michael A Dyer; Charles G Mullighan; Richard J Gilbertson; Elaine R Mardis; Richard K Wilson; James R Downing; David W Ellison; Jinghui Zhang; Suzanne J Baker
Journal:  Nat Genet       Date:  2012-01-29       Impact factor: 38.330

9.  Whole-exome sequencing of cell-free DNA and circulating tumor cells in multiple myeloma.

Authors:  S Manier; J Park; M Capelletti; M Bustoros; S S Freeman; G Ha; J Rhoades; C J Liu; D Huynh; S C Reed; G Gydush; K Z Salem; D Rotem; C Freymond; A Yosef; A Perilla-Glen; L Garderet; E M Van Allen; S Kumar; J C Love; G Getz; V A Adalsteinsson; I M Ghobrial
Journal:  Nat Commun       Date:  2018-04-27       Impact factor: 14.919

Review 10.  dPCR: A Technology Review.

Authors:  Phenix-Lan Quan; Martin Sauzade; Eric Brouzes
Journal:  Sensors (Basel)       Date:  2018-04-20       Impact factor: 3.576

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  14 in total

Review 1.  Current and Emerging Applications of Droplet Digital PCR in Oncology: An Updated Review.

Authors:  Susana Olmedillas-López; Rocío Olivera-Salazar; Mariano García-Arranz; Damián García-Olmo
Journal:  Mol Diagn Ther       Date:  2021-11-13       Impact factor: 4.074

Review 2.  The Clinical Applications of Liquid Biopsies in Pediatric Brain Tumors: A Systematic Literature Review.

Authors:  Ladina Greuter; Nicole Frank; Raphael Guzman; Jehuda Soleman
Journal:  Cancers (Basel)       Date:  2022-05-28       Impact factor: 6.575

3.  Adult brainstem glioma: a multicentre retrospective analysis of 47 Italian patients.

Authors:  Andrea Rigamonti; Giorgia Simonetti; Antonio Silvani; Roberta Rudà; Federica Franchino; Veronica Villani; Andrea Pace; Rossella Merli; Maura Servida; Alberto Picca; Giulia Berzero; Alfonso Cerase; Ivano Chiarotti; Giannantonio Spena; Andrea Salmaggi
Journal:  Neurol Sci       Date:  2020-09-21       Impact factor: 3.307

4.  Pediatric midline H3K27M-mutant tumor with disseminated leptomeningeal disease and glioneuronal features: case report and literature review.

Authors:  Ralph E Navarro; Danielle Golub; Travis Hill; Michelle W McQuinn; Christopher William; David Zagzag; Eveline Teresa Hidalgo
Journal:  Childs Nerv Syst       Date:  2020-09-28       Impact factor: 1.475

Review 5.  Liquid Biopsy Strategies to Distinguish Progression from Pseudoprogression and Radiation Necrosis in Glioblastomas.

Authors:  Anudeep Yekula; Koushik Muralidharan; Zachary S Rosh; Anna E Youngkin; Keiko M Kang; Leonora Balaj; Bob S Carter
Journal:  Adv Biosyst       Date:  2020-06-02

6.  Longitudinal monitoring of diffuse midline glioma using liquid biopsy.

Authors:  Tej D Azad; Chetan Bettegowda
Journal:  Neuro Oncol       Date:  2022-08-01       Impact factor: 13.029

7.  Standardization of the liquid biopsy for pediatric diffuse midline glioma using ddPCR.

Authors:  Daphne Li; Erin R Bonner; Kyle Wierzbicki; Eshini Panditharatna; Tina Huang; Rishi Lulla; Sabine Mueller; Carl Koschmann; Javad Nazarian; Amanda M Saratsis
Journal:  Sci Rep       Date:  2021-03-03       Impact factor: 4.379

Review 8.  Liquid Biomarkers for Pediatric Brain Tumors: Biological Features, Advantages and Perspectives.

Authors:  Sibylle Madlener; Johannes Gojo
Journal:  J Pers Med       Date:  2020-11-27

9.  Management of Inoperable Supra-Sellar Low-Grade Glioma With BRAF Mutation in Young Children.

Authors:  Kaitlyn Howden; Stacy Chapman; Demitre Serletis; Colin Kazina; Mubeen F Rafay; Damien Faury; Lili-Naz Hazrati; Nada Jabado; Magimairajan Issai Vanan
Journal:  Cureus       Date:  2021-11-09

10.  A novel workflow for cancer blood biomarker identification.

Authors:  Xiang Wang; Zhiqiang Qiu; Xiangwen Ji; Weihai Ning; Yihua An; Shengdian Wang; Hongwei Zhang
Journal:  Ann Transl Med       Date:  2020-11
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