Literature DB >> 31278665

Transposable Elements: Classification, Identification, and Their Use As a Tool For Comparative Genomics.

Wojciech Makałowski1, Valer Gotea2, Amit Pande3, Izabela Makałowska4.   

Abstract

Most genomes are populated by hundreds of thousands of sequences originated from mobile elements. On the one hand, these sequences present a real challenge in the process of genome analysis and annotation. On the other hand, they are very interesting biological subjects involved in many cellular processes. Here we present an overview of transposable elements biodiversity, and we discuss different approaches to transposable elements detection and analyses.

Keywords:  Genome analysis; Genome evolution; Mobile elements; Repetitive elements; Transposable elements; Transposons

Year:  2019        PMID: 31278665     DOI: 10.1007/978-1-4939-9074-0_6

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  24 in total

Review 1.  Omics-Facilitated Crop Improvement for Climate Resilience and Superior Nutritive Value.

Authors:  Tinashe Zenda; Songtao Liu; Anyi Dong; Jiao Li; Yafei Wang; Xinyue Liu; Nan Wang; Huijun Duan
Journal:  Front Plant Sci       Date:  2021-12-01       Impact factor: 5.753

2.  Analysis of repeat elements in the Pristionchus pacificus genome reveals an ancient invasion by horizontally transferred transposons.

Authors:  Marina Athanasouli; Christian Rödelsperger
Journal:  BMC Genomics       Date:  2022-07-19       Impact factor: 4.547

Review 3.  IFN-Aging: Coupling Aging With Interferon Response.

Authors:  Wei Cao
Journal:  Front Aging       Date:  2022-05-02

4.  Software evaluation for de novo detection of transposons.

Authors:  Matias Rodriguez; Wojciech Makałowski
Journal:  Mob DNA       Date:  2022-04-27

5.  Patterns of piRNA Regulation in Drosophila Revealed through Transposable Element Clade Inference.

Authors:  Iskander Said; Michael P McGurk; Andrew G Clark; Daniel A Barbash
Journal:  Mol Biol Evol       Date:  2022-01-07       Impact factor: 8.800

6.  Transposable element accumulation drives size differences among polymorphic Y Chromosomes in Drosophila.

Authors:  Alison H Nguyen; Weixiang Wang; Emily Chong; Kamalakar Chatla; Doris Bachtrog
Journal:  Genome Res       Date:  2022-05-02       Impact factor: 9.438

7.  Computational Analysis of Transposable Elements and CircRNAs in Plants.

Authors:  Liliane Santana Oliveira; Andressa Caroline Patera; Douglas Silva Domingues; Danilo Sipoli Sanches; Fabricio Martins Lopes; Pedro Henrique Bugatti; Priscila Tiemi Maeda Saito; Vinicius Maracaja-Coutinho; Alan Mitchell Durham; Alexandre Rossi Paschoal
Journal:  Methods Mol Biol       Date:  2021

8.  R2 and Non-Site-Specific R2-Like Retrotransposons of the German Cockroach, Blattella germanica.

Authors:  Arina Zagoskina; Sergei Firsov; Irina Lazebnaya; Oleg Lazebny; Dmitry V Mukha
Journal:  Genes (Basel)       Date:  2020-10-15       Impact factor: 4.096

Review 9.  Transposable Elements and Stress in Vertebrates: An Overview.

Authors:  Anna Maria Pappalardo; Venera Ferrito; Maria Assunta Biscotti; Adriana Canapa; Teresa Capriglione
Journal:  Int J Mol Sci       Date:  2021-02-17       Impact factor: 5.923

Review 10.  Advances in Cereal Crop Genomics for Resilience under Climate Change.

Authors:  Tinashe Zenda; Songtao Liu; Anyi Dong; Huijun Duan
Journal:  Life (Basel)       Date:  2021-05-29
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.