| Literature DB >> 34195962 |
Liliane Santana Oliveira1,2, Andressa Caroline Patera3, Douglas Silva Domingues3,4, Danilo Sipoli Sanches3, Fabricio Martins Lopes3, Pedro Henrique Bugatti3, Priscila Tiemi Maeda Saito3, Vinicius Maracaja-Coutinho5, Alan Mitchell Durham6, Alexandre Rossi Paschoal7.
Abstract
This chapter provides two main contributions: (1) a description of computational tools and databases used to identify and analyze transposable elements (TEs) and circRNAs in plants; and (2) data analysis on public TE and circRNA data. Our goal is to highlight the primary information available in the literature on circular noncoding RNAs and transposable elements in plants. The exploratory analysis performed on publicly available circRNA and TEs data help discuss four sequence features. Finally, we investigate the association on circRNAs:TE in plants in the model organism Arabidopsis thaliana.Entities:
Keywords: Bioinformatics; CircRNAs; Circular RNA; Computational methods; Data analysis; Databases; Interaction; Mobile elements; Noncoding; Transposable elements
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Year: 2021 PMID： 34195962 DOI： 10.1007/978-1-0716-1645-1_9
Source DB: PubMed Journal: Methods Mol Biol ISSN： 1064-3745