Literature DB >> 31256257

Modernising breeding for orphan crops: tools, methodologies, and beyond.

Jean-Marcel Ribaut1, Michel Ragot2.   

Abstract

MAIN
CONCLUSION: In spite of the limited investment in orphan crops, access to new technologies such as bioinformatics and low-cost genotyping opens new doors to modernise their breeding effectively. Innovation in plant breeding is imperative to meet the world's growing demand for staple food and feed crops, and orphan crops can play a significant role in increasing productivity and quality, especially in developing countries. The short breeding history of most orphan crops implies that genetic gain should be achievable through easy-to-implement approaches such as forward breeding for simple traits or introgression of elite alleles at key target trait loci. However, limited financial support and access to sufficient, relevant and reliable phenotypic data continue to pose major challenges in terms of resources and capabilities. Digitalisation of orphan-crop breeding programmes can help not only to improve data quality and management, but also to mitigate data scarcity by allowing data to be accumulated and analysed over time and across teams. Bioinformatics tools and access to technologies such as molecular markers, some of them provided as services via specific platforms, allow breeders to implement modern strategies to improve breeding efficiency. In orphan crops, more marker-trait associations relevant to breeding germplasm are generally needed, but implementing digitalization, marker-based quality control or simple trait screening and introgression will help modernising breeding. Finally, the development of local capacities-of both people and infrastructure-remains a necessity to ensure the sustainable adoption of modern breeding approaches.

Entities:  

Keywords:  Africa; Crop information system; Data management; Developing countries; Genomics resources; Molecular breeding

Mesh:

Year:  2019        PMID: 31256257     DOI: 10.1007/s00425-019-03200-8

Source DB:  PubMed          Journal:  Planta        ISSN: 0032-0935            Impact factor:   4.116


  30 in total

1.  Data-sharing and data-withholding in genetics and the life sciences: results of a national survey of technology transfer officers.

Authors:  Eric G Campbell; Eran Bendavid
Journal:  J Health Care Law Policy       Date:  2003

Review 2.  More genomic resources for less-studied crops.

Authors:  Rajeev K Varshney; Jean-Christophe Glaszmann; Hei Leung; Jean-Marcel Ribaut
Journal:  Trends Biotechnol       Date:  2010-08-06       Impact factor: 19.536

3.  Accessing genetic diversity for crop improvement.

Authors:  J C Glaszmann; B Kilian; H D Upadhyaya; R K Varshney
Journal:  Curr Opin Plant Biol       Date:  2010-02-16       Impact factor: 7.834

Review 4.  Orphan legume crops enter the genomics era!

Authors:  Rajeev K Varshney; Timothy J Close; Nagendra K Singh; David A Hoisington; Douglas R Cook
Journal:  Curr Opin Plant Biol       Date:  2009-01-20       Impact factor: 7.834

Review 5.  Molecular breeding in developing countries: challenges and perspectives.

Authors:  J-M Ribaut; M C de Vicente; X Delannay
Journal:  Curr Opin Plant Biol       Date:  2010-01-26       Impact factor: 7.834

Review 6.  Bioinformatics in the orphan crops.

Authors:  Ian Armstead; Lin Huang; Adriana Ravagnani; Paul Robson; Helen Ougham
Journal:  Brief Bioinform       Date:  2009-09-04       Impact factor: 11.622

7.  Can genomics boost productivity of orphan crops?

Authors:  Rajeev K Varshney; Jean-Marcel Ribaut; Edward S Buckler; Roberto Tuberosa; J Antoni Rafalski; Peter Langridge
Journal:  Nat Biotechnol       Date:  2012-12       Impact factor: 54.908

8.  Bridging the phenotypic and genetic data useful for integrated breeding through a data annotation using the Crop Ontology developed by the crop communities of practice.

Authors:  Rosemary Shrestha; Luca Matteis; Milko Skofic; Arllet Portugal; Graham McLaren; Glenn Hyman; Elizabeth Arnaud
Journal:  Front Physiol       Date:  2012-08-25       Impact factor: 4.566

9.  Construction of chromosome segment substitution lines in peanut (Arachis hypogaea L.) using a wild synthetic and QTL mapping for plant morphology.

Authors:  Daniel Fonceka; Hodo-Abalo Tossim; Ronan Rivallan; Hélène Vignes; Elodie Lacut; Fabien de Bellis; Issa Faye; Ousmane Ndoye; Soraya C M Leal-Bertioli; José F M Valls; David J Bertioli; Jean-Christophe Glaszmann; Brigitte Courtois; Jean-François Rami
Journal:  PLoS One       Date:  2012-11-19       Impact factor: 3.240

10.  Application of genomic tools in plant breeding.

Authors:  A M Pérez-de-Castro; S Vilanova; J Cañizares; L Pascual; J M Blanca; M J Díez; J Prohens; B Picó
Journal:  Curr Genomics       Date:  2012-05       Impact factor: 2.236

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  4 in total

1.  Promoting orphan crops research and development.

Authors:  Zerihun Tadele; Dorothea Bartels
Journal:  Planta       Date:  2019-09       Impact factor: 4.116

2.  Population-tailored mock genome enables genomic studies in species without a reference genome.

Authors:  Felipe Sabadin; Humberto Fanelli Carvalho; Giovanni Galli; Roberto Fritsche-Neto
Journal:  Mol Genet Genomics       Date:  2021-11-09       Impact factor: 3.291

3.  Mainstreaming orphan millets for advancing climate smart agriculture to secure nutrition and health.

Authors:  Piyoosh K Babele; Himabindu Kudapa; Yogeshwar Singh; Rajeev K Varshney; Anil Kumar
Journal:  Front Plant Sci       Date:  2022-08-12       Impact factor: 6.627

4.  Strategies for Effective Use of Genomic Information in Crop Breeding Programs Serving Africa and South Asia.

Authors:  Nicholas Santantonio; Sikiru Adeniyi Atanda; Yoseph Beyene; Rajeev K Varshney; Michael Olsen; Elizabeth Jones; Manish Roorkiwal; Manje Gowda; Chellapilla Bharadwaj; Pooran M Gaur; Xuecai Zhang; Kate Dreher; Claudio Ayala-Hernández; Jose Crossa; Paulino Pérez-Rodríguez; Abhishek Rathore; Star Yanxin Gao; Susan McCouch; Kelly R Robbins
Journal:  Front Plant Sci       Date:  2020-03-27       Impact factor: 5.753

  4 in total

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