Literature DB >> 31253980

A genetics-led approach defines the drug target landscape of 30 immune-related traits.

Hai Fang1, Hans De Wolf2, Bogdan Knezevic1, Katie L Burnham1, Julie Osgood1, Anna Sanniti1, Alicia Lledó Lara1, Silva Kasela3, Stephane De Cesco4, Jörg K Wegner2, Lahiru Handunnetthi1, Fiona E McCann5, Liye Chen6, Takuya Sekine6, Paul E Brennan4,7, Brian D Marsden5,7, David Damerell7, Chris A O'Callaghan1,8, Chas Bountra7, Paul Bowness6,8, Yvonne Sundström9, Lili Milani3, Louise Berg9, Hinrich W Göhlmann2, Pieter J Peeters2, Benjamin P Fairfax10, Michael Sundström9, Julian C Knight11,12.   

Abstract

Most candidate drugs currently fail later-stage clinical trials, largely due to poor prediction of efficacy on early target selection1. Drug targets with genetic support are more likely to be therapeutically valid2,3, but the translational use of genome-scale data such as from genome-wide association studies for drug target discovery in complex diseases remains challenging4-6. Here, we show that integration of functional genomic and immune-related annotations, together with knowledge of network connectivity, maximizes the informativeness of genetics for target validation, defining the target prioritization landscape for 30 immune traits at the gene and pathway level. We demonstrate how our genetics-led drug target prioritization approach (the priority index) successfully identifies current therapeutics, predicts activity in high-throughput cellular screens (including L1000, CRISPR, mutagenesis and patient-derived cell assays), enables prioritization of under-explored targets and allows for determination of target-level trait relationships. The priority index is an open-access, scalable system accelerating early-stage drug target selection for immune-mediated disease.

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Year:  2019        PMID: 31253980      PMCID: PMC7124888          DOI: 10.1038/s41588-019-0456-1

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  64 in total

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Journal:  Nat Genet       Date:  2015-06-29       Impact factor: 38.330

2.  High-Throughput Gene Expression Profiles to Define Drug Similarity and Predict Compound Activity.

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Journal:  Nature       Date:  2017-07-19       Impact factor: 49.962

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Journal:  J Allergy Clin Immunol       Date:  2013-02-04       Impact factor: 10.793

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Authors:  Cynthia L Smith; Janan T Eppig
Journal:  Wiley Interdiscip Rev Syst Biol Med       Date:  2009 Nov-Dec

6.  The druggable genome and support for target identification and validation in drug development.

Authors:  Chris Finan; Anna Gaulton; Felix A Kruger; R Thomas Lumbers; Tina Shah; Jorgen Engmann; Luana Galver; Ryan Kelley; Anneli Karlsson; Rita Santos; John P Overington; Aroon D Hingorani; Juan P Casas
Journal:  Sci Transl Med       Date:  2017-03-29       Impact factor: 17.956

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Authors:  John A Todd; Marina Evangelou; Antony J Cutler; Marcin L Pekalski; Neil M Walker; Helen E Stevens; Linsey Porter; Deborah J Smyth; Daniel B Rainbow; Ricardo C Ferreira; Laura Esposito; Kara M D Hunter; Kevin Loudon; Kathryn Irons; Jennie H Yang; Charles J M Bell; Helen Schuilenburg; James Heywood; Ben Challis; Sankalpa Neupane; Pamela Clarke; Gillian Coleman; Sarah Dawson; Donna Goymer; Katerina Anselmiova; Jane Kennet; Judy Brown; Sarah L Caddy; Jia Lu; Jane Greatorex; Ian Goodfellow; Chris Wallace; Tim I Tree; Mark Evans; Adrian P Mander; Simon Bond; Linda S Wicker; Frank Waldron-Lynch
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Journal:  Drugs       Date:  2017-04       Impact factor: 9.546

9.  Systematic identification of trans eQTLs as putative drivers of known disease associations.

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Journal:  Nat Genet       Date:  2013-09-08       Impact factor: 38.330

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Journal:  Nat Commun       Date:  2018-01-17       Impact factor: 14.919

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  56 in total

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Journal:  J Gerontol A Biol Sci Med Sci       Date:  2019-11-13       Impact factor: 6.053

Review 3.  Recent advances in understanding the genetic basis of systemic lupus erythematosus.

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Journal:  Semin Immunopathol       Date:  2021-11-03       Impact factor: 9.623

4.  RIPK1 gene variants associate with obesity in humans and can be therapeutically silenced to reduce obesity in mice.

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Journal:  Nat Metab       Date:  2020-09-28

5.  Utilizing graph machine learning within drug discovery and development.

Authors:  Thomas Gaudelet; Ben Day; Arian R Jamasb; Jyothish Soman; Cristian Regep; Gertrude Liu; Jeremy B R Hayter; Richard Vickers; Charles Roberts; Jian Tang; David Roblin; Tom L Blundell; Michael M Bronstein; Jake P Taylor-King
Journal:  Brief Bioinform       Date:  2021-11-05       Impact factor: 11.622

Review 6.  Facing the urgency of therapies for progressive MS - a Progressive MS Alliance proposal.

Authors:  Fernando Dangond; Alexis Donnelly; Reinhard Hohlfeld; Catherine Lubetzki; Susan Kohlhaas; Letizia Leocani; Olga Ciccarelli; Bruno Stankoff; Maria Pia Sormani; Jeremy Chataway; Federico Bozzoli; Francesco Cucca; Lisa Melton; Timothy Coetzee; Marco Salvetti
Journal:  Nat Rev Neurol       Date:  2021-01-22       Impact factor: 42.937

Review 7.  Advances in Genomic Discovery and Implications for Personalized Prevention and Medicine: Estonia as Example.

Authors:  Bram Peter Prins; Liis Leitsalu; Katri Pärna; Krista Fischer; Andres Metspalu; Toomas Haller; Harold Snieder
Journal:  J Pers Med       Date:  2021-04-29

8.  Commentary: Using human genetics to guide the repurposing of medicines.

Authors:  Jonas Bovijn; Jenny C Censin; Cecilia M Lindgren; Michael V Holmes
Journal:  Int J Epidemiol       Date:  2020-08-01       Impact factor: 7.196

9.  Complex genetic signatures in immune cells underlie autoimmunity and inform therapy.

Authors:  Valeria Orrù; Maristella Steri; Carlo Sidore; Michele Marongiu; Valentina Serra; Stefania Olla; Gabriella Sole; Sandra Lai; Mariano Dei; Antonella Mulas; Francesca Virdis; Maria Grazia Piras; Monia Lobina; Mara Marongiu; Maristella Pitzalis; Francesca Deidda; Annalisa Loizedda; Stefano Onano; Magdalena Zoledziewska; Stephen Sawcer; Marcella Devoto; Myriam Gorospe; Gonçalo R Abecasis; Matteo Floris; Mauro Pala; David Schlessinger; Edoardo Fiorillo; Francesco Cucca
Journal:  Nat Genet       Date:  2020-09-14       Impact factor: 38.330

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Journal:  Cancer Immunol Immunother       Date:  2021-07-27       Impact factor: 6.968

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