| Literature DB >> 31236197 |
Ke-Wei Wang1, Ming Dong2.
Abstract
Circular RNA (circRNA) is a newly discovered non-coding RNA with special structure, which is widely expressed in eukaryotic organisms and mainly located in the cytoplasm. circRNAs participate in gene regulation by working as miRNA sponges that block the inhibitory effect of miRNA on its target genes. In addition, circRNAs can bind to RNA binding proteins to regulate gene expression. Based on characteristics of stability, expression specificity and participation in gene regulation, circRNAs are expected to be biomarkers for early diagnosis of cancer or potential targets for cancer therapy. With the help of bioinformatics analysis, circRNA microarray analysis and high-throughput sequencing technology, more circRNAs were discovered to participate in the progression of gastric cancer (GC) over the past three years. This article gives an overview of these recent research focusing on the roles of circRNAs in GC and highlights the advances.Entities:
Keywords: Biomarker; Circular RNA; Gastric cancer; Prognosis; Therapeutic target
Year: 2019 PMID: 31236197 PMCID: PMC6580317 DOI: 10.4251/wjgo.v11.i6.459
Source DB: PubMed Journal: World J Gastrointest Oncol
Figure 1Classification of circRNAs according to their components. EcircRNAs are composed of single or multi-exons. In EIciRNAs, exons are circularized with introns "retained" between exons. CiRNAs are composed of introns.
Deregulated circRNA in gastric cancer: function and potential signaling pathway
| hsa_circ_0000993 | Downregulation | Inhibits proliferation, migration and invasion | miR-214-5p | [ |
| has_circ_0001461 | Downregulation | Inhibits proliferation, migration and invasion; correlates with the clinical stage | miR-548g, RUNX1 in the cytoplasm; YBX1 in the nucleus | [ |
| has_circ_0002320 | Downregulation | Inhibits proliferation and invasion; correlates with TMN stage and survival time | miR-367-5p, p27 | [ |
| hsa_circ_0027599 | Downregulation | Inhibits proliferation and migration; correlates with TNM stage | miR-101, PHLDA1 | [ |
| circRNA_100269 | Downregulation | Inhibits proliferation; correlates with histological subtype,node invasive number and overall survival time | miR-630 | [ |
| circRNA_101057 | Downregulation | Inhibits proliferation and invasion; correlates with tumor size and lymphatic metastasis and overall survival time | miR-424, LATS1 | [ |
| circZFR | Downregulation | Inhibits proliferation and promotes apoptosis | miR-130a/miR-107, PTEN | [ |
| hsa_circ_0017639 | Upregulation | Promotes proliferation; correlates with TNM stage | miR-182-5p, CREB1 | [ |
| circRNA_0000284 | Upregulation | Promotes proliferation; correlates with T stage | miR-124 and miR-29b, COL1A1, COL4A1 and CDK6 | [ |
| circRNA_001569 | Upregulation | Promotes proliferation and inhibits apoptosis; correlates with tumor size, depth of invasion and clinical stage | miR-145, NR4A2 | [ |
| circPDSS1 | Upregulation | Promotes proliferation and inhibits apoptosis;correlates with worse overall survival time | miR-186-5p, NEK2 | [ |
| circNF1 | Upregulation | Promotes proliferation | miR-16, MAP7 and AKT3 | [ |
| ciRS-7 | Upregulation | Promotes proliferation and inhibits apoptosis; correlates with TNM stage and poor overall survival time | miR-7, PTEN/PI3K/AKT pathway | [ |
RUNX1: Runt-related transcription factor 1; YBX1: Y-box binding protein-1; PHLDA1: Pleckstrin homology like domain family A member 1; LATS1: Large tumor suppressor kinase 1; PTEN: Phosphatase and tensin homolog; CREB1: cAMP response element binding protein 1; COL1A1: Collagen type I α1 chain; COL4A1: Collagen type IV α1 chain; CDK6: Cyclin-dependent kinase 6; NR4A2: Nuclear receptor subfamily 4 group A member 2; NEK2: NIMA related kinase 2; MAP7: Microtubule associated protein 7.
Deregulated circRNA in gastric cancer: diagnostic or predictive biomarker
| hsa_circ_00000 96 | Downregulation | 12.9 | 0.82 | - | - | Gender, invasion and TNM stage | [ |
| hsa_circ_00001 81 | Downregulation | 9.4 | 0.756 | 85.2% | 53.9% | Tumor diameter, lymphatic metastasis, distal metastasis, and CA19-9 (tissue) | [ |
| 7.27 | 0.582 | 20.6% | 99% | CEA and differentiation (plasma) | |||
| hsa_circ_00001 90 | Downregulation | 6.83 | 0.75 | 72.1% | 68.3% | Tumor diameter, TNM stage and CA19-9 (tissue) | [ |
| 3.07 | 0.6 | 41.4% | 87.5% | CEA (plasma) | |||
| hsa_circ_00005 20 | Downregulation | - | 0.6129 | 53.57% | 85.71% | TNM stage (tissue) | [ |
| - | 0.8967 | 82.35% | 84.44% | CEA (plasma) | |||
| hsa_circ_00007 45 | Downregulation | - | 0.683 | 85.5% | 45% | Tumor differentiation (tissue) and TNM stage (plasma) | [ |
| hsa_circ_00018 95 | Downregulation | 9.53 | 0.792 | 67.8% | 85.7% | Tumor differentiation, Borrmann type, and tissue CEA | [ |
| hsa_circ_00001649 | Downregulation | 0.227 | 0.834 | 71.1% | 81.6% | Tumor differentiation | [ |
| hsa_circ_002059 | Downregulation | 12.9 | 0.73 | 81% | 62% | TMN stage, distal metastasis, gender and age | [ |
| hsa_circ_00031 59 | Downregulation | 12.31 | 0.75 | 85.2% | 56.5% | Gender, distal metastasis, and TMN stage | [ |
| hsa_circ_00066 33 | Downregulation | 8.17 | 0.741 | 60% | 81% | Distal metastasis and CEA | [ |
| hsa_circ_00147 17 | Downregulation | 12.14 | 0.696 | 59.38% | 81.25% | Tumor stage; distal metastasis; CEA; CA199 | [ |
| has_circ_00667 79 | Downregulation | - | 0.6726 | 90.3% | 56.4% | TNM stage overall survival time | [ |
| hsa_circ_00743 62 | Downregulation | 12.17 | 0.63 | 84.3% | 36.2% | CA19–9 and lymphatic metastasis | [ |
| hsa_circ_01308 10 | Downregulation | 1.443 | 0.7481 | 77.42% | 68% | TNM stage and overall survival time | [ |
| hsa_circ_00004 67 | Upregulation | - | 0.79 | 70.5% | 64.8% | TNM stage | [ |
| hsa_circ_00176 39 | Upregulation | 11.46 | 0.7585 | 80.56% | 63.89% | TNM stage | [ |
| hsa_circ_00664 44 | Upregulation | - | 0.7328 | 70.75% | 68.87% | Lymphatic metastasis | [ |
AUC: Area under the curve; CA19-9: Carbohydrate antigen 19-9; CEA: Carcinoembryonic antigen.