Literature DB >> 34462357

MicroED structure of the human adenosine receptor determined from a single nanocrystal in LCP.

Michael W Martynowycz1,2, Anna Shiriaeva3,4, Xuanrui Ge3,5, Johan Hattne1,2, Brent L Nannenga6,7, Vadim Cherezov8,4, Tamir Gonen9,2,10.   

Abstract

G protein-coupled receptors (GPCRs), or seven-transmembrane receptors, are a superfamily of membrane proteins that are critically important to physiological processes in the human body. Determining high-resolution structures of GPCRs without bound cognate signaling partners, such as a G protein, requires crystallization in lipidic cubic phase (LCP). GPCR crystals grown in LCP are often too small for traditional X-ray crystallography. These microcrystals are ideal for investigation by microcrystal electron diffraction (MicroED), but the gel-like nature of LCP makes traditional approaches to MicroED sample preparation insurmountable. Here, we show that the structure of a human A2A adenosine receptor can be determined by MicroED after converting the LCP into the sponge phase followed by focused ion-beam milling. We determined the structure of the A2A adenosine receptor to 2.8-Å resolution and resolved an antagonist in its orthosteric ligand-binding site, as well as four cholesterol molecules bound around the receptor. This study lays the groundwork for future structural studies of lipid-embedded membrane proteins by MicroED using single microcrystals that would be impossible with other crystallographic methods.

Entities:  

Keywords:  GPCR; MicroED; ion-beam milling; lipidic cubic phase; membrane proteins

Mesh:

Substances:

Year:  2021        PMID: 34462357      PMCID: PMC8433539          DOI: 10.1073/pnas.2106041118

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  54 in total

1.  Analysis of Global and Site-Specific Radiation Damage in Cryo-EM.

Authors:  Johan Hattne; Dan Shi; Calina Glynn; Chih-Te Zee; Marcus Gallagher-Jones; Michael W Martynowycz; Jose A Rodriguez; Tamir Gonen
Journal:  Structure       Date:  2018-04-26       Impact factor: 5.006

Review 2.  International Union of Basic and Clinical Pharmacology. LXXXI. Nomenclature and classification of adenosine receptors--an update.

Authors:  Bertil B Fredholm; Adriaan P IJzerman; Kenneth A Jacobson; Joel Linden; Christa E Müller
Journal:  Pharmacol Rev       Date:  2011-02-08       Impact factor: 25.468

3.  Three-dimensional reconstructions from incomplete data: interpretability of density maps at "atomic" resolution.

Authors:  R M Glaeser; L Tong; S H Kim
Journal:  Ultramicroscopy       Date:  1989-04       Impact factor: 2.689

Review 4.  G Protein-Coupled Receptors as Targets for Approved Drugs: How Many Targets and How Many Drugs?

Authors:  Krishna Sriram; Paul A Insel
Journal:  Mol Pharmacol       Date:  2018-01-03       Impact factor: 4.436

5.  Tailoring Tryptophan Synthase TrpB for Selective Quaternary Carbon Bond Formation.

Authors:  Markus Dick; Nicholas S Sarai; Michael W Martynowycz; Tamir Gonen; Frances H Arnold
Journal:  J Am Chem Soc       Date:  2019-12-06       Impact factor: 15.419

Review 6.  Lipidic cubic phase technologies for membrane protein structural studies.

Authors:  Vadim Cherezov
Journal:  Curr Opin Struct Biol       Date:  2011-07-19       Impact factor: 6.809

7.  The CryoEM Method MicroED as a Powerful Tool for Small Molecule Structure Determination.

Authors:  Christopher G Jones; Michael W Martynowycz; Johan Hattne; Tyler J Fulton; Brian M Stoltz; Jose A Rodriguez; Hosea M Nelson; Tamir Gonen
Journal:  ACS Cent Sci       Date:  2018-11-02       Impact factor: 14.553

8.  A Workflow for Protein Structure Determination From Thin Crystal Lamella by Micro-Electron Diffraction.

Authors:  Emma V Beale; David G Waterman; Corey Hecksel; Jason van Rooyen; James B Gilchrist; James M Parkhurst; Felix de Haas; Bart Buijsse; Gwyndaf Evans; Peijun Zhang
Journal:  Front Mol Biosci       Date:  2020-08-04

9.  Sub-ångström cryo-EM structure of a prion protofibril reveals a polar clasp.

Authors:  Marcus Gallagher-Jones; Calina Glynn; David R Boyer; Michael W Martynowycz; Evelyn Hernandez; Jennifer Miao; Chih-Te Zee; Irina V Novikova; Lukasz Goldschmidt; Heather T McFarlane; Gustavo F Helguera; James E Evans; Michael R Sawaya; Duilio Cascio; David S Eisenberg; Tamir Gonen; Jose A Rodriguez
Journal:  Nat Struct Mol Biol       Date:  2018-01-15       Impact factor: 15.369

10.  MicroED structure of the NaK ion channel reveals a Na+ partition process into the selectivity filter.

Authors:  Shian Liu; Tamir Gonen
Journal:  Commun Biol       Date:  2018-05-03
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  8 in total

Review 1.  Electron Diffraction of 3D Molecular Crystals.

Authors:  Ambarneil Saha; Shervin S Nia; José A Rodríguez
Journal:  Chem Rev       Date:  2022-08-15       Impact factor: 72.087

2.  Ab initio phasing macromolecular structures using electron-counted MicroED data.

Authors:  Michael W Martynowycz; Max T B Clabbers; Johan Hattne; Tamir Gonen
Journal:  Nat Methods       Date:  2022-05-30       Impact factor: 47.990

Review 3.  Molecular Simulations and Drug Discovery of Adenosine Receptors.

Authors:  Jinan Wang; Apurba Bhattarai; Hung N Do; Sana Akhter; Yinglong Miao
Journal:  Molecules       Date:  2022-03-22       Impact factor: 4.411

Review 4.  Current Adenosinergic Therapies: What Do Cancer Cells Stand to Gain and Lose?

Authors:  Jana Kotulová; Marián Hajdúch; Petr Džubák
Journal:  Int J Mol Sci       Date:  2021-11-22       Impact factor: 5.923

Review 5.  MicroED: conception, practice and future opportunities.

Authors:  Max T B Clabbers; Anna Shiriaeva; Tamir Gonen
Journal:  IUCrJ       Date:  2022-01-18       Impact factor: 4.769

Review 6.  International Union of Basic and Clinical Pharmacology. CXII: Adenosine Receptors: A Further Update.

Authors:  Adriaan P IJzerman; Kenneth A Jacobson; Christa E Müller; Bruce N Cronstein; Rodrigo A Cunha
Journal:  Pharmacol Rev       Date:  2022-04       Impact factor: 25.468

7.  Studying membrane proteins with MicroED.

Authors:  Marc J Gallenito; Tamir Gonen
Journal:  Biochem Soc Trans       Date:  2022-02-28       Impact factor: 4.919

8.  Benchmarking the ideal sample thickness in cryo-EM.

Authors:  Michael W Martynowycz; Max T B Clabbers; Johan Unge; Johan Hattne; Tamir Gonen
Journal:  Proc Natl Acad Sci U S A       Date:  2021-12-07       Impact factor: 11.205

  8 in total

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