Literature DB >> 31171448

Accurate Estimation of Neural Population Dynamics without Spike Sorting.

Eric M Trautmann1, Sergey D Stavisky2, Subhaneil Lahiri3, Katherine C Ames4, Matthew T Kaufman5, Daniel J O'Shea6, Saurabh Vyas7, Xulu Sun8, Stephen I Ryu9, Surya Ganguli10, Krishna V Shenoy11.   

Abstract

A central goal of systems neuroscience is to relate an organism's neural activity to behavior. Neural population analyses often reduce the data dimensionality to focus on relevant activity patterns. A major hurdle to data analysis is spike sorting, and this problem is growing as the number of recorded neurons increases. Here, we investigate whether spike sorting is necessary to estimate neural population dynamics. The theory of random projections suggests that we can accurately estimate the geometry of low-dimensional manifolds from a small number of linear projections of the data. We recorded data using Neuropixels probes in motor cortex of nonhuman primates and reanalyzed data from three previous studies and found that neural dynamics and scientific conclusions are quite similar using multiunit threshold crossings rather than sorted neurons. This finding unlocks existing data for new analyses and informs the design and use of new electrode arrays for laboratory and clinical use.
Copyright © 2019 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  brain computer interface; dimensionality reduction; neural dynamics; neural implant; neural signal processing; neural trajectories; neurophysiology; random projections; spike sorting

Mesh:

Year:  2019        PMID: 31171448      PMCID: PMC7002296          DOI: 10.1016/j.neuron.2019.05.003

Source DB:  PubMed          Journal:  Neuron        ISSN: 0896-6273            Impact factor:   17.173


  70 in total

1.  Emergence of an abstract categorical code enabling the discrimination of temporally structured tactile stimuli.

Authors:  Román Rossi-Pool; Emilio Salinas; Antonio Zainos; Manuel Alvarez; José Vergara; Néstor Parga; Ranulfo Romo
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-21       Impact factor: 11.205

2.  Computing by Robust Transience: How the Fronto-Parietal Network Performs Sequential, Category-Based Decisions.

Authors:  Warasinee Chaisangmongkon; Sruthi K Swaminathan; David J Freedman; Xiao-Jing Wang
Journal:  Neuron       Date:  2017-03-22       Impact factor: 17.173

3.  Long-term stability of neural prosthetic control signals from silicon cortical arrays in rhesus macaque motor cortex.

Authors:  Cynthia A Chestek; Vikash Gilja; Paul Nuyujukian; Justin D Foster; Joline M Fan; Matthew T Kaufman; Mark M Churchland; Zuley Rivera-Alvidrez; John P Cunningham; Stephen I Ryu; Krishna V Shenoy
Journal:  J Neural Eng       Date:  2011-07-20       Impact factor: 5.379

4.  Comparison of spike sorting and thresholding of voltage waveforms for intracortical brain-machine interface performance.

Authors:  Breanne P Christie; Derek M Tat; Zachary T Irwin; Vikash Gilja; Paul Nuyujukian; Justin D Foster; Stephen I Ryu; Krishna V Shenoy; David E Thompson; Cynthia A Chestek
Journal:  J Neural Eng       Date:  2014-12-11       Impact factor: 5.379

5.  Functional, but not anatomical, separation of "what" and "when" in prefrontal cortex.

Authors:  Christian K Machens; Ranulfo Romo; Carlos D Brody
Journal:  J Neurosci       Date:  2010-01-06       Impact factor: 6.167

6.  HermesC: low-power wireless neural recording system for freely moving primates.

Authors:  Cynthia A Chestek; Vikash Gilja; Paul Nuyujukian; Ryan J Kier; Florian Solzbacher; Stephen I Ryu; Reid R Harrison; Krishna V Shenoy
Journal:  IEEE Trans Neural Syst Rehabil Eng       Date:  2009-06-02       Impact factor: 3.802

7.  Demixed principal component analysis of neural population data.

Authors:  Dmitry Kobak; Wieland Brendel; Christos Constantinidis; Claudia E Feierstein; Adam Kepecs; Zachary F Mainen; Xue-Lian Qi; Ranulfo Romo; Naoshige Uchida; Christian K Machens
Journal:  Elife       Date:  2016-04-12       Impact factor: 8.140

8.  Neural population dynamics in human motor cortex during movements in people with ALS.

Authors:  Chethan Pandarinath; Vikash Gilja; Christine H Blabe; Paul Nuyujukian; Anish A Sarma; Brittany L Sorice; Emad N Eskandar; Leigh R Hochberg; Jaimie M Henderson; Krishna V Shenoy
Journal:  Elife       Date:  2015-06-23       Impact factor: 8.140

9.  Persistently active neurons in human medial frontal and medial temporal lobe support working memory.

Authors:  Jan Kamiński; Shannon Sullivan; Jeffrey M Chung; Ian B Ross; Adam N Mamelak; Ueli Rutishauser
Journal:  Nat Neurosci       Date:  2017-02-20       Impact factor: 24.884

10.  Stimulus-Driven Population Activity Patterns in Macaque Primary Visual Cortex.

Authors:  Benjamin R Cowley; Matthew A Smith; Adam Kohn; Byron M Yu
Journal:  PLoS Comput Biol       Date:  2016-12-09       Impact factor: 4.475

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  53 in total

1.  SHYBRID: A Graphical Tool for Generating Hybrid Ground-Truth Spiking Data for Evaluating Spike Sorting Performance.

Authors:  Jasper Wouters; Fabian Kloosterman; Alexander Bertrand
Journal:  Neuroinformatics       Date:  2021-01

Review 2.  Rethinking brain-wide interactions through multi-region 'network of networks' models.

Authors:  Matthew G Perich; Kanaka Rajan
Journal:  Curr Opin Neurobiol       Date:  2020-11-27       Impact factor: 6.627

Review 3.  Two views on the cognitive brain.

Authors:  David L Barack; John W Krakauer
Journal:  Nat Rev Neurosci       Date:  2021-04-15       Impact factor: 34.870

Review 4.  Computation Through Neural Population Dynamics.

Authors:  Saurabh Vyas; Matthew D Golub; David Sussillo; Krishna V Shenoy
Journal:  Annu Rev Neurosci       Date:  2020-07-08       Impact factor: 12.449

Review 5.  Approaches to inferring multi-regional interactions from simultaneous population recordings: Inferring multi-regional interactions from simultaneous population recordings.

Authors:  Byungwoo Kang; Shaul Druckmann
Journal:  Curr Opin Neurobiol       Date:  2020-11-20       Impact factor: 6.627

6.  Maintained Representations of the Ipsilateral and Contralateral Limbs during Bimanual Control in Primary Motor Cortex.

Authors:  Kevin P Cross; Ethan A Heming; Douglas J Cook; Stephen H Scott
Journal:  J Neurosci       Date:  2020-07-23       Impact factor: 6.167

7.  A neural network for online spike classification that improves decoding accuracy.

Authors:  Deepa Issar; Ryan C Williamson; Sanjeev B Khanna; Matthew A Smith
Journal:  J Neurophysiol       Date:  2020-02-26       Impact factor: 2.714

8.  Power-saving design opportunities for wireless intracortical brain-computer interfaces.

Authors:  Nir Even-Chen; Dante G Muratore; Sergey D Stavisky; Leigh R Hochberg; Jaimie M Henderson; Boris Murmann; Krishna V Shenoy
Journal:  Nat Biomed Eng       Date:  2020-08-03       Impact factor: 25.671

9.  Hand Knob Area of Premotor Cortex Represents the Whole Body in a Compositional Way.

Authors:  Francis R Willett; Darrel R Deo; Donald T Avansino; Paymon Rezaii; Leigh R Hochberg; Jaimie M Henderson; Krishna V Shenoy
Journal:  Cell       Date:  2020-03-26       Impact factor: 41.582

10.  Neural ensemble dynamics in dorsal motor cortex during speech in people with paralysis.

Authors:  Krishna V Shenoy; Jaimie M Henderson; Sergey D Stavisky; Francis R Willett; Guy H Wilson; Brian A Murphy; Paymon Rezaii; Donald T Avansino; William D Memberg; Jonathan P Miller; Robert F Kirsch; Leigh R Hochberg; A Bolu Ajiboye; Shaul Druckmann
Journal:  Elife       Date:  2019-12-10       Impact factor: 8.140

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