Literature DB >> 27067378

Demixed principal component analysis of neural population data.

Dmitry Kobak1, Wieland Brendel1,2,3, Christos Constantinidis4, Claudia E Feierstein1, Adam Kepecs5, Zachary F Mainen1, Xue-Lian Qi4, Ranulfo Romo6,7, Naoshige Uchida8, Christian K Machens1.   

Abstract

Neurons in higher cortical areas, such as the prefrontal cortex, are often tuned to a variety of sensory and motor variables, and are therefore said to display mixed selectivity. This complexity of single neuron responses can obscure what information these areas represent and how it is represented. Here we demonstrate the advantages of a new dimensionality reduction technique, demixed principal component analysis (dPCA), that decomposes population activity into a few components. In addition to systematically capturing the majority of the variance of the data, dPCA also exposes the dependence of the neural representation on task parameters such as stimuli, decisions, or rewards. To illustrate our method we reanalyze population data from four datasets comprising different species, different cortical areas and different experimental tasks. In each case, dPCA provides a concise way of visualizing the data that summarizes the task-dependent features of the population response in a single figure.

Entities:  

Keywords:  dimensionality reduction; neuroscience; population activity; prefrontal cortex; principal component analysis; rat; rhesus macaque

Mesh:

Year:  2016        PMID: 27067378      PMCID: PMC4887222          DOI: 10.7554/eLife.10989

Source DB:  PubMed          Journal:  Elife        ISSN: 2050-084X            Impact factor:   8.140


  35 in total

1.  Neural correlates, computation and behavioural impact of decision confidence.

Authors:  Adam Kepecs; Naoshige Uchida; Hatim A Zariwala; Zachary F Mainen
Journal:  Nature       Date:  2008-09-11       Impact factor: 49.962

2.  Quantifying the signals contained in heterogeneous neural responses and determining their relationships with task performance.

Authors:  Marino Pagan; Nicole C Rust
Journal:  J Neurophysiol       Date:  2014-06-11       Impact factor: 2.714

3.  Neural correlates of a decision variable before learning to perform a match/non-match task.

Authors:  Xue-Lian Qi; Travis Meyer; Terrence R Stanford; Christos Constantinidis
Journal:  J Neurosci       Date:  2012-05-02       Impact factor: 6.167

4.  Stimulus selectivity in dorsal and ventral prefrontal cortex after training in working memory tasks.

Authors:  Travis Meyer; Xue-Lian Qi; Terrence R Stanford; Christos Constantinidis
Journal:  J Neurosci       Date:  2011-04-27       Impact factor: 6.167

5.  Functional, but not anatomical, separation of "what" and "when" in prefrontal cortex.

Authors:  Christian K Machens; Ranulfo Romo; Carlos D Brody
Journal:  J Neurosci       Date:  2010-01-06       Impact factor: 6.167

Review 6.  Population-wide distributions of neural activity during perceptual decision-making.

Authors:  Adrien Wohrer; Mark D Humphries; Christian K Machens
Journal:  Prog Neurobiol       Date:  2012-11-01       Impact factor: 11.685

7.  Respiration phase-locks to fast stimulus presentations: implications for the interpretation of posterior midline "deactivations".

Authors:  Willem Huijbers; Cyriel M A Pennartz; Ewa Beldzik; Aleksandra Domagalik; M Vinck; Winnie F Hofman; Roberto Cabeza; Sander M Daselaar
Journal:  Hum Brain Mapp       Date:  2014-04-16       Impact factor: 5.038

8.  Demixing population activity in higher cortical areas.

Authors:  Christian K Machens
Journal:  Front Comput Neurosci       Date:  2010-10-06       Impact factor: 2.380

9.  A category-free neural population supports evolving demands during decision-making.

Authors:  David Raposo; Matthew T Kaufman; Anne K Churchland
Journal:  Nat Neurosci       Date:  2014-11-10       Impact factor: 24.884

10.  Encoding and decoding in parietal cortex during sensorimotor decision-making.

Authors:  Il Memming Park; Miriam L R Meister; Alexander C Huk; Jonathan W Pillow
Journal:  Nat Neurosci       Date:  2014-08-31       Impact factor: 24.884

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  123 in total

1.  Task-dependent recurrent dynamics in visual cortex.

Authors:  Satohiro Tajima; Kowa Koida; Chihiro I Tajima; Hideyuki Suzuki; Kazuyuki Aihara; Hidehiko Komatsu
Journal:  Elife       Date:  2017-07-24       Impact factor: 8.140

2.  Working memory capacity is enhanced by distributed prefrontal activation and invariant temporal dynamics.

Authors:  Hua Tang; Xue-Lian Qi; Mitchell R Riley; Christos Constantinidis
Journal:  Proc Natl Acad Sci U S A       Date:  2019-03-15       Impact factor: 11.205

3.  Temporal signals underlying a cognitive process in the dorsal premotor cortex.

Authors:  Román Rossi-Pool; Jerónimo Zizumbo; Manuel Alvarez; José Vergara; Antonio Zainos; Ranulfo Romo
Journal:  Proc Natl Acad Sci U S A       Date:  2019-03-27       Impact factor: 11.205

4.  Object comparison in the lateral intraparietal area.

Authors:  Wei Song Ong; Koorosh Mirpour; James W Bisley
Journal:  J Neurophysiol       Date:  2017-08-09       Impact factor: 2.714

5.  Population activity statistics dissect subthreshold and spiking variability in V1.

Authors:  Mihály Bányai; Zsombor Koman; Gergő Orbán
Journal:  J Neurophysiol       Date:  2017-03-15       Impact factor: 2.714

6.  Task-specific, dimension-based attentional shaping of motion processing in monkey area MT.

Authors:  Bastian Schledde; F Orlando Galashan; Magdalena Przybyla; Andreas K Kreiter; Detlef Wegener
Journal:  J Neurophysiol       Date:  2017-06-28       Impact factor: 2.714

Review 7.  The Lateral Habenula Circuitry: Reward Processing and Cognitive Control.

Authors:  Phillip M Baker; Thomas Jhou; Bo Li; Masayuki Matsumoto; Sheri J Y Mizumori; Marcus Stephenson-Jones; Aleksandra Vicentic
Journal:  J Neurosci       Date:  2016-11-09       Impact factor: 6.167

8.  Revealing unobserved factors underlying cortical activity with a rectified latent variable model applied to neural population recordings.

Authors:  Matthew R Whiteway; Daniel A Butts
Journal:  J Neurophysiol       Date:  2016-12-07       Impact factor: 2.714

9.  Rethinking assumptions about how trial and nuisance variability impact neural task performance in a fast-processing regime.

Authors:  Noam Roth; Nicole C Rust
Journal:  J Neurophysiol       Date:  2018-11-07       Impact factor: 2.714

10.  Attractor Dynamics in Networks with Learning Rules Inferred from In Vivo Data.

Authors:  Ulises Pereira; Nicolas Brunel
Journal:  Neuron       Date:  2018-06-14       Impact factor: 17.173

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