Literature DB >> 31160815

Deep learning can predict microsatellite instability directly from histology in gastrointestinal cancer.

Jakob Nikolas Kather1,2,3,4,5, Alexander T Pearson6, Niels Halama7,8,9, Dirk Jäger7,10,8, Jeremias Krause11, Sven H Loosen11, Alexander Marx12, Peter Boor13, Frank Tacke14, Ulf Peter Neumann15, Heike I Grabsch16,17, Takaki Yoshikawa18,19, Hermann Brenner7,20,21, Jenny Chang-Claude22,23, Michael Hoffmeister20, Christian Trautwein11, Tom Luedde24.   

Abstract

Microsatellite instability determines whether patients with gastrointestinal cancer respond exceptionally well to immunotherapy. However, in clinical practice, not every patient is tested for MSI, because this requires additional genetic or immunohistochemical tests. Here we show that deep residual learning can predict MSI directly from H&E histology, which is ubiquitously available. This approach has the potential to provide immunotherapy to a much broader subset of patients with gastrointestinal cancer.

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Mesh:

Year:  2019        PMID: 31160815      PMCID: PMC7423299          DOI: 10.1038/s41591-019-0462-y

Source DB:  PubMed          Journal:  Nat Med        ISSN: 1078-8956            Impact factor:   53.440


  163 in total

Review 1.  Deep learning in histopathology: the path to the clinic.

Authors:  Jeroen van der Laak; Geert Litjens; Francesco Ciompi
Journal:  Nat Med       Date:  2021-05-14       Impact factor: 53.440

Review 2.  Artificial Intelligence in Pathology.

Authors:  Sebastian Försch; Frederick Klauschen; Peter Hufnagl; Wilfried Roth
Journal:  Dtsch Arztebl Int       Date:  2021-03-26       Impact factor: 5.594

Review 3.  Designing deep learning studies in cancer diagnostics.

Authors:  Andreas Kleppe; Ole-Johan Skrede; Sepp De Raedt; Knut Liestøl; David J Kerr; Håvard E Danielsen
Journal:  Nat Rev Cancer       Date:  2021-01-29       Impact factor: 60.716

4.  Whole slide images reflect DNA methylation patterns of human tumors.

Authors:  Hong Zheng; Alexandre Momeni; Pierre-Louis Cedoz; Hannes Vogel; Olivier Gevaert
Journal:  NPJ Genom Med       Date:  2020-03-10       Impact factor: 8.617

5.  Clinical-Grade Detection of Microsatellite Instability in Colorectal Tumors by Deep Learning.

Authors:  Amelie Echle; Heike Irmgard Grabsch; Philip Quirke; Piet A van den Brandt; Nicholas P West; Gordon G A Hutchins; Lara R Heij; Xiuxiang Tan; Susan D Richman; Jeremias Krause; Elizabeth Alwers; Josien Jenniskens; Kelly Offermans; Richard Gray; Hermann Brenner; Jenny Chang-Claude; Christian Trautwein; Alexander T Pearson; Peter Boor; Tom Luedde; Nadine Therese Gaisa; Michael Hoffmeister; Jakob Nikolas Kather
Journal:  Gastroenterology       Date:  2020-06-17       Impact factor: 22.682

Review 6.  Acute myeloid leukemia and artificial intelligence, algorithms and new scores.

Authors:  Nathan Radakovich; Matthew Cortese; Aziz Nazha
Journal:  Best Pract Res Clin Haematol       Date:  2020-06-07       Impact factor: 3.020

7.  Feasibility of fully automated classification of whole slide images based on deep learning.

Authors:  Kyung-Ok Cho; Sung Hak Lee; Hyun-Jong Jang
Journal:  Korean J Physiol Pharmacol       Date:  2020-12-20       Impact factor: 2.016

8.  Pan-cancer image-based detection of clinically actionable genetic alterations.

Authors:  Alexander T Pearson; Tom Luedde; Jakob Nikolas Kather; Lara R Heij; Heike I Grabsch; Chiara Loeffler; Amelie Echle; Hannah Sophie Muti; Jeremias Krause; Jan M Niehues; Kai A J Sommer; Peter Bankhead; Loes F S Kooreman; Jefree J Schulte; Nicole A Cipriani; Roman D Buelow; Peter Boor; Nadi-Na Ortiz-Brüchle; Andrew M Hanby; Valerie Speirs; Sara Kochanny; Akash Patnaik; Andrew Srisuwananukorn; Hermann Brenner; Michael Hoffmeister; Piet A van den Brandt; Dirk Jäger; Christian Trautwein
Journal:  Nat Cancer       Date:  2020-07-27

9.  Histopathological characteristics and artificial intelligence for predicting tumor mutational burden-high colorectal cancer.

Authors:  Yoshifumi Shimada; Shujiro Okuda; Yu Watanabe; Yosuke Tajima; Masayuki Nagahashi; Hiroshi Ichikawa; Masato Nakano; Jun Sakata; Yasumasa Takii; Takashi Kawasaki; Kei-Ichi Homma; Tomohiro Kamori; Eiji Oki; Yiwei Ling; Shiho Takeuchi; Toshifumi Wakai
Journal:  J Gastroenterol       Date:  2021-04-28       Impact factor: 7.527

10.  Deep Learning-Based Segmentation and Quantification in Experimental Kidney Histopathology.

Authors:  Nassim Bouteldja; Barbara M Klinkhammer; Roman D Bülow; Patrick Droste; Simon W Otten; Saskia Freifrau von Stillfried; Julia Moellmann; Susan M Sheehan; Ron Korstanje; Sylvia Menzel; Peter Bankhead; Matthias Mietsch; Charis Drummer; Michael Lehrke; Rafael Kramann; Jürgen Floege; Peter Boor; Dorit Merhof
Journal:  J Am Soc Nephrol       Date:  2020-11-05       Impact factor: 10.121

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