Literature DB >> 33514930

Designing deep learning studies in cancer diagnostics.

Andreas Kleppe1,2, Ole-Johan Skrede1,2, Sepp De Raedt1,2, Knut Liestøl1,2, David J Kerr3, Håvard E Danielsen4,5,6.   

Abstract

The number of publications on deep learning for cancer diagnostics is rapidly increasing, and systems are frequently claimed to perform comparable with or better than clinicians. However, few systems have yet demonstrated real-world medical utility. In this Perspective, we discuss reasons for the moderate progress and describe remedies designed to facilitate transition to the clinic. Recent, presumably influential, deep learning studies in cancer diagnostics, of which the vast majority used images as input to the system, are evaluated to reveal the status of the field. By manipulating real data, we then exemplify that much and varied training data facilitate the generalizability of neural networks and thus the ability to use them clinically. To reduce the risk of biased performance estimation of deep learning systems, we advocate evaluation in external cohorts and strongly advise that the planned analyses, including a predefined primary analysis, are described in a protocol preferentially stored in an online repository. Recommended protocol items should be established for the field, and we present our suggestions.

Entities:  

Year:  2021        PMID: 33514930     DOI: 10.1038/s41568-020-00327-9

Source DB:  PubMed          Journal:  Nat Rev Cancer        ISSN: 1474-175X            Impact factor:   60.716


  146 in total

Review 1.  Deep learning in neural networks: an overview.

Authors:  Jürgen Schmidhuber
Journal:  Neural Netw       Date:  2014-10-13

Review 2.  Deep learning.

Authors:  Yann LeCun; Yoshua Bengio; Geoffrey Hinton
Journal:  Nature       Date:  2015-05-28       Impact factor: 49.962

Review 3.  Applications of machine learning in drug discovery and development.

Authors:  Jessica Vamathevan; Dominic Clark; Paul Czodrowski; Ian Dunham; Edgardo Ferran; George Lee; Bin Li; Anant Madabhushi; Parantu Shah; Michaela Spitzer; Shanrong Zhao
Journal:  Nat Rev Drug Discov       Date:  2019-06       Impact factor: 84.694

Review 4.  Artificial intelligence in radiology.

Authors:  Ahmed Hosny; Chintan Parmar; John Quackenbush; Lawrence H Schwartz; Hugo J W L Aerts
Journal:  Nat Rev Cancer       Date:  2018-08       Impact factor: 60.716

5.  Automated Classification of Skin Lesions: From Pixels to Practice.

Authors:  Akhila Narla; Brett Kuprel; Kavita Sarin; Roberto Novoa; Justin Ko
Journal:  J Invest Dermatol       Date:  2018-10       Impact factor: 8.551

Review 6.  Artificial intelligence in digital pathology - new tools for diagnosis and precision oncology.

Authors:  Kaustav Bera; Kurt A Schalper; David L Rimm; Vamsidhar Velcheti; Anant Madabhushi
Journal:  Nat Rev Clin Oncol       Date:  2019-08-09       Impact factor: 66.675

7.  A comparison of deep learning performance against health-care professionals in detecting diseases from medical imaging: a systematic review and meta-analysis.

Authors:  Xiaoxuan Liu; Livia Faes; Aditya U Kale; Siegfried K Wagner; Dun Jack Fu; Alice Bruynseels; Thushika Mahendiran; Gabriella Moraes; Mohith Shamdas; Christoph Kern; Joseph R Ledsam; Martin K Schmid; Konstantinos Balaskas; Eric J Topol; Lucas M Bachmann; Pearse A Keane; Alastair K Denniston
Journal:  Lancet Digit Health       Date:  2019-09-25

8.  Variable generalization performance of a deep learning model to detect pneumonia in chest radiographs: A cross-sectional study.

Authors:  John R Zech; Marcus A Badgeley; Manway Liu; Anthony B Costa; Joseph J Titano; Eric Karl Oermann
Journal:  PLoS Med       Date:  2018-11-06       Impact factor: 11.069

9.  Design Characteristics of Studies Reporting the Performance of Artificial Intelligence Algorithms for Diagnostic Analysis of Medical Images: Results from Recently Published Papers.

Authors:  Dong Wook Kim; Hye Young Jang; Kyung Won Kim; Youngbin Shin; Seong Ho Park
Journal:  Korean J Radiol       Date:  2019-03       Impact factor: 3.500

10.  Artificial intelligence versus clinicians: systematic review of design, reporting standards, and claims of deep learning studies.

Authors:  Myura Nagendran; Yang Chen; Christopher A Lovejoy; Anthony C Gordon; Matthieu Komorowski; Hugh Harvey; Eric J Topol; John P A Ioannidis; Gary S Collins; Mahiben Maruthappu
Journal:  BMJ       Date:  2020-03-25
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  23 in total

Review 1.  Deep learning in histopathology: the path to the clinic.

Authors:  Jeroen van der Laak; Geert Litjens; Francesco Ciompi
Journal:  Nat Med       Date:  2021-05-14       Impact factor: 53.440

2.  Applications of Artificial Intelligence in Pediatric Oncology: A Systematic Review.

Authors:  Siddhi Ramesh; Sukarn Chokkara; Timothy Shen; Ajay Major; Samuel L Volchenboum; Anoop Mayampurath; Mark A Applebaum
Journal:  JCO Clin Cancer Inform       Date:  2021-12

3.  Security Evaluation of Financial and Insurance and Ruin Probability Analysis Integrating Deep Learning Models.

Authors:  Yang Yang
Journal:  Comput Intell Neurosci       Date:  2022-06-08

4.  Swarm learning for decentralized artificial intelligence in cancer histopathology.

Authors:  Oliver Lester Saldanha; Philip Quirke; Nicholas P West; Jacqueline A James; Maurice B Loughrey; Heike I Grabsch; Manuel Salto-Tellez; Elizabeth Alwers; Didem Cifci; Narmin Ghaffari Laleh; Tobias Seibel; Richard Gray; Gordon G A Hutchins; Hermann Brenner; Marko van Treeck; Tanwei Yuan; Titus J Brinker; Jenny Chang-Claude; Firas Khader; Andreas Schuppert; Tom Luedde; Christian Trautwein; Hannah Sophie Muti; Sebastian Foersch; Michael Hoffmeister; Daniel Truhn; Jakob Nikolas Kather
Journal:  Nat Med       Date:  2022-04-25       Impact factor: 87.241

Review 5.  Harnessing multimodal data integration to advance precision oncology.

Authors:  Kevin M Boehm; Pegah Khosravi; Rami Vanguri; Jianjiong Gao; Sohrab P Shah
Journal:  Nat Rev Cancer       Date:  2021-10-18       Impact factor: 69.800

6.  Cancer detection from stained biopsies using high-speed spectral imaging.

Authors:  Eugene Brozgol; Pramod Kumar; Daniela Necula; Irena Bronshtein-Berger; Moshe Lindner; Shlomi Medalion; Lee Twito; Yotam Shapira; Helena Gondra; Iris Barshack; Yuval Garini
Journal:  Biomed Opt Express       Date:  2022-03-28       Impact factor: 3.562

7.  Deep Machine Learning for Oral Cancer: From Precise Diagnosis to Precision Medicine.

Authors:  Rasheed Omobolaji Alabi; Alhadi Almangush; Mohammed Elmusrati; Antti A Mäkitie
Journal:  Front Oral Health       Date:  2022-01-11

8.  Detection of Metastatic Tumor Cells in the Bone Marrow Aspirate Smears by Artificial Intelligence (AI)-Based Morphogo System.

Authors:  Pu Chen; Run Chen Xu; Nan Chen; Lan Zhang; Li Zhang; Jianfeng Zhu; Baishen Pan; Beili Wang; Wei Guo
Journal:  Front Oncol       Date:  2021-09-27       Impact factor: 6.244

Review 9.  Artificial intelligence in liver diseases: Improving diagnostics, prognostics and response prediction.

Authors:  David Nam; Julius Chapiro; Valerie Paradis; Tobias Paul Seraphin; Jakob Nikolas Kather
Journal:  JHEP Rep       Date:  2022-02-02

Review 10.  Vascular Endothelial Senescence: Pathobiological Insights, Emerging Long Noncoding RNA Targets, Challenges and Therapeutic Opportunities.

Authors:  Xinghui Sun; Mark W Feinberg
Journal:  Front Physiol       Date:  2021-06-16       Impact factor: 4.566

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