| Literature DB >> 31125363 |
Piers Allen1, Antonio Calcagni1,2,3, Anthony G Robson3,4, Ela Claridge1.
Abstract
It has been postulated that particular patterns of macular pigment (MP) distribution may be associated with the risk for eye diseases such as age-related macular degeneration (AMD). This work investigates the potential of Zernike polynomials (ZP) to characterise the level and distribution of MP, and their suitability as a representation for analysis of the effects of age and AMD on MP patterns. As the case study, MP distribution maps computed using an experimental method based on fundus reflectance (MRIA) were obtained for ninety volunteers representing three groups: under-fifty without AMD, fifty and over without AMD, and fifty and over with AMD. ZP with 105 coefficients were fitted to the maps using least-squares optimisation and found to represent MP maps accurately (RMSE<10-1). One-way MANOVA analysis carried out on ZP representations showed that the three subject groups have significantly different means (Wilk's Lambda 0.125, p<0.0001). Linear discriminant analysis with leave-one-out scheme resulted in accuracy, sensitivity and specificity of classification according to, respectively, disease status regardless of age (81% all); disease status in the age-matched groups (87%, 88%, 86%); age irrespective of disease status (81%, 83%, 73%); and age for subjects without AMD (83%, 88%, 80%). Mean MP distributions computed from ZP coefficients for the three groups showed more elevated and more peaked MP for the healthy under-fifty group; more irregular and more elevated peripheral levels in over-fifty AMD group than in over-fifty non-AMD group; and moderate radial asymmetry in non-AMD over-50 group. The results suggest that ZP coefficients are capable of accurately representing MP in a way that captures certain spatial patterns of its distribution. Using the ZP representation MP maps could be classified according to both age and disease status with accuracy significantly greater than chance, with peak elevation, pattern irregularity and radial asymmetry identified as important features.Entities:
Mesh:
Substances:
Year: 2019 PMID: 31125363 PMCID: PMC6534297 DOI: 10.1371/journal.pone.0217265
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Demographics of the experimental groups.
| Group | Age | Diagnosis | Number of subjects | Males / Females | Mean age [range] | Number of images |
|---|---|---|---|---|---|---|
| 1 | under 50 | without AMD | 30 | 18 / 12 | 32 [10–49] | 238/203 |
| 2 | 50 and over | without AMD | 30 | 13/17 | 70 [50–83] | 237/153 |
| 3 | 50 and over | with AMD | 30 | 10 / 20 | 73 [53–91] | 132/123 |
Subjects in group 2 did not have any visible drusen / pigmentary abnormalities suggestive of AMD; subjects in group 3 were diagnosed with AMD (early, intermediate or late).
Performance of the optimisation algorithms.
| Accuracy | Robustness | Uniqueness | |
|---|---|---|---|
| Least squares | 8.82 x 10−2 | 2.53 x 10−4 | 0.0 |
| Quasi-Newton | 8.82 x 10−2 | 2.53 x 10−4 | 0.0 |
| Levenberg-Marquardt | 8.83 x 10−2 | 2.83 x 10−4 | 0.9 |
Accuracy was evaluated on the noise-free data. Robustness to noise was evaluated by repeating the experiment ten times on the same dataset with different 10% uniformly distributed noise.
Classification using PRNN classifier with LOO selection.
| Test groups | Mean | Best | ||||
|---|---|---|---|---|---|---|
| Not-centred | Accuracy | Sensitivity | Specificity | Accuracy | Sensitivity | Specificity |
| 1&2 vs 3 | 0.74 | 0.77 | 0.43 | 0.85 | 0.84 | 1.00 |
| 2 vs 3 | 0.56 | 0.58 | 0.51 | 0.74 | 0.70 | 0.83 |
| 1 vs 2&3 | 0.68 | 0.62 | 0.71 | 0.78 | 0.94 | 0.73 |
| 1 vs 2 | 0.63 | 0.66 | 0.59 | 0.80 | 0.83 | 0.75 |
| Centred | ||||||
| 1&2 vs 3 | 0.72 | 0.74 | 0.35 | 0.81 | 0.80 | 1.0 |
| 2 vs 3 | 0.54 | 0.56 | 0.49 | 0.67 | 0.65 | 1.0 |
| 1 vs 2&3 | 0.61 | 0.53 | 0.65 | 0.74 | 0.67 | 0.79 |
| 1 vs 2 | 0.61 | 0.65 | 0.56 | 0.74 | 0.70 | 0.82 |
Accuracy, sensitivity and specificity are shown according to disease status regardless of age (1&2 vs 3); the disease status in the age-matched groups (2 vs 3); age irrespective of disease status (1 vs 2&3); and age for subjects without AMD (1 vs 2). Columns on the left show the mean results for the LOO method, columns on the right show the best results among all the LOO tests. Test groups are described in Table 1.
Classification using LDA classifier with LOO selection on the ranked coefficients.
| Test groups | All coefficients | N coefficients | |||||
|---|---|---|---|---|---|---|---|
| Not-centred | Accuracy | Sensitivity | Specificity | Accuracy | Sensitivity | Specificity | N |
| 1&2 vs 3 | 0.81 | 0.81 | 0.81 | 0.80 | 0.78 | 0.80 | 95 |
| 2 vs 3 | 0.87 | 0.88 | 0.86 | 0.81 | 0.83 | 0.83 | 82 |
| 1 vs 2&3 | 0.81 | 0.83 | 0.78 | 0.81 | 0.81 | 0.78 | 93 |
| 1 vs 2 | 0.83 | 0.88 | 0.80 | 0.81 | 0.84 | 0.78 | 90 |
| Centred | Accuracy | Sensitivity | Specificity | Accuracy | Sensitivity | Specificity | N |
| 1&2 vs 3 | 0.77 | 0.76 | 0.78 | 0.79 | 0.73 | 0.81 | 98 |
| 2 vs 3 | 0.83 | 0.86 | 0.79 | 0.81 | 0.86 | 0.76 | 82 |
| 1 vs 2&3 | 0.80 | 0.83 | 0.76 | 0.80 | 0.82 | 0.76 | 96 |
| 1 vs 2 | 0.81 | 0.84 | 0.79 | 0.78 | 0.82 | 0.76 | 88 |
Accuracy, sensitivity and specificity of classification according to the disease status regardless of age (1&2 vs 3), disease status in the age-matched groups (2 vs 3); age irrespective of disease status (1 vs 2&3); and age for subjects without AMD (1 vs 2). Columns on the left show the mean results when using all 105 coefficients, columns on the right show the results when only N unique coefficients were identified by the classifier. Test groups are described in Table 1.
First 15 ZP coefficients ranked highest according to their significance using a feature selection algorithm based on a two-way t-test.
| Test group | Fifteen highest ranking ZP coefficients for each test | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1&2 vs 3 | 4 | 14 | 12 | 76 | 55 | 101 | 78 | 91 | 48 | 25 | 95 | 58 | 36 | 71 | 64 |
| 2 vs 3 | 76 | 14 | 101 | 61 | 48 | 5 | 84 | 55 | 62 | 51 | 1 | 95 | 32 | 85 | 90 |
| 1 vs 2&3 | 4 | 12 | 55 | 14 | 78 | 91 | 7 | 66 | 64 | 92 | 67 | 49 | 36 | 25 | 1 |
| 1 vs 2 | 12 | 3 | 7 | 1 | 67 | 91 | 78 | 49 | 21 | 66 | 55 | 57 | 8 | 46 | 10 |
The numbers are ANSI sequential indices, see Eq (4). Colour coding indicates the principal pattern of a given ZP coefficient as follows: blue–magnitude; green–asymmetry; red–irregularity of the periphery. Test groups are described in Table 1.