Literature DB >> 31117657

Hydrogen Donation but not Abstraction by a Tyrosine (Y68) during Endoperoxide Installation by Verruculogen Synthase (FtmOx1).

Noah P Dunham, José M Del Río Pantoja, Bo Zhang, Lauren J Rajakovich, Benjamin D Allen, Carsten Krebs, Amie K Boal, J Martin Bollinger.   

Abstract

Hydrogen-atom transfer (HAT) from a substrate carbon to an iron(IV)-oxo (ferryl) intermediate initiates a diverse array of enzymatic transformations. For outcomes other than hydroxylation, coupling of the resultant carbon radical and hydroxo ligand (oxygen rebound) must generally be averted. A recent study of FtmOx1, a fungal iron(II)- and 2-(oxo)glutarate-dependent oxygenase that installs the endoperoxide of verruculogen by adding O2 between carbons 21 and 27 of fumitremorgin B, posited that tyrosine (Tyr or Y) 224 serves as HAT intermediary to separate the C21 radical (C21•) and Fe(III)-OH HAT products and prevent rebound. Our reinvestigation of the FtmOx1 mechanism revealed, instead, direct HAT from C21 to the ferryl complex and surprisingly competitive rebound. The C21-hydroxylated (rebound) product, which undergoes deprenylation, predominates when low [O2] slows C21•-O2 coupling in the next step of the endoperoxidation pathway. This pathway culminates with addition of the C21-O-O• peroxyl adduct to olefinic C27 followed by HAT to the C26• from a Tyr. The last step results in sequential accumulation of Tyr radicals, which are suppressed without detriment to turnover by inclusion of the reductant, ascorbate. Replacement of each of four candidates for the proximal C26 Hdonor (including Y224) with phenylalanine (F) revealed that only the Y68F variant (i) fails to accumulate the first Tyr• and (ii) makes an altered major product, identifying Y68 as the donor. The implied proximities of C21 to the iron cofactor and C26 to Y68 support a new docking model of the enzyme-substrate complex that is consistent with all available data.

Entities:  

Year:  2019        PMID: 31117657      PMCID: PMC6901024          DOI: 10.1021/jacs.9b03567

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  71 in total

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Authors:  John C Price; Eric W Barr; Lee M Hoffart; Carsten Krebs; J Martin Bollinger
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3.  α-Amine Desaturation of d-Arginine by the Iron(II)- and 2-(Oxo)glutarate-Dependent l-Arginine 3-Hydroxylase, VioC.

Authors:  Noah P Dunham; Andrew J Mitchell; José M Del Río Pantoja; Carsten Krebs; J Martin Bollinger; Amie K Boal
Journal:  Biochemistry       Date:  2018-11-07       Impact factor: 3.162

4.  Two-step epoxidation of hyoscyamine to scopolamine is catalyzed by bifunctional hyoscyamine 6 beta-hydroxylase.

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Review 5.  The 2-His-1-carboxylate facial triad: a versatile platform for dioxygen activation by mononuclear non-heme iron(II) enzymes.

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6.  Functional genomics and the biosynthesis of artemisinin.

Authors:  Patrick S Covello; Keat H Teoh; Devin R Polichuk; Darwin W Reed; Goska Nowak
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7.  Oxidative cyclizations in orthosomycin biosynthesis expand the known chemistry of an oxygenase superfamily.

Authors:  Kathryn M McCulloch; Emilianne K McCranie; Jarrod A Smith; Maruf Sarwar; Jeannette L Mathieu; Bryan L Gitschlag; Yu Du; Brian O Bachmann; T M Iverson
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8.  Crystal structure of a clavaminate synthase-Fe(II)-2-oxoglutarate-substrate-NO complex: evidence for metal centered rearrangements.

Authors:  Zhihong Zhang; Jing shan Ren; Karl Harlos; Colin H McKinnon; Ian J Clifton; Christopher J Schofield
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9.  JLigand: a graphical tool for the CCP4 template-restraint library.

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  8 in total

1.  Nature's Machinery, Repurposed: Expanding the Repertoire of Iron-Dependent Oxygenases.

Authors:  Noah P Dunham; Frances H Arnold
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2.  Evidence for Modulation of Oxygen Rebound Rate in Control of Outcome by Iron(II)- and 2-Oxoglutarate-Dependent Oxygenases.

Authors:  Juan Pan; Eliott S Wenger; Megan L Matthews; Christopher J Pollock; Minakshi Bhardwaj; Amelia J Kim; Benjamin D Allen; Robert B Grossman; Carsten Krebs; J Martin Bollinger
Journal:  J Am Chem Soc       Date:  2019-09-16       Impact factor: 15.419

3.  Synthesis of 6,6- and 7,7-Difluoro-1-acetamidopyrrolizidines and Their Oxidation Catalyzed by the Nonheme Fe Oxygenase LolO.

Authors:  Nabin Panth; Eliott S Wenger; Carsten Krebs; J Martin Bollinger; Robert B Grossman
Journal:  Chembiochem       Date:  2022-05-17       Impact factor: 3.461

4.  Molecular insights into the endoperoxide formation by Fe(II)/α-KG-dependent oxygenase NvfI.

Authors:  Takahiro Mori; Rui Zhai; Richiro Ushimaru; Yudai Matsuda; Ikuro Abe
Journal:  Nat Commun       Date:  2021-07-20       Impact factor: 14.919

Review 5.  Chemical modifications of proteins and their applications in metalloenzyme studies.

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6.  Mechanistic analysis of carbon-carbon bond formation by deoxypodophyllotoxin synthase.

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Review 7.  Structural basis for endoperoxide-forming oxygenases.

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Journal:  Beilstein J Org Chem       Date:  2022-06-21       Impact factor: 2.544

8.  Dissecting the Mechanism of the Nonheme Iron Endoperoxidase FtmOx1 Using Substrate Analogues.

Authors:  Guoliang Zhu; Wupeng Yan; Xinye Wang; Ronghai Cheng; Nathchar Naowarojna; Kun Wang; Jun Wang; Heng Song; Yuyang Wang; Hairong Liu; Xuekui Xia; Catherine E Costello; Xueting Liu; Lixin Zhang; Pinghua Liu
Journal:  JACS Au       Date:  2022-06-10
  8 in total

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