Literature DB >> 15805601

Likelihood-enhanced fast translation functions.

Airlie J McCoy1, Ralf W Grosse-Kunstleve, Laurent C Storoni, Randy J Read.   

Abstract

This paper is a companion to a recent paper on fast rotation functions [Storoni et al. (2004), Acta Cryst. D60, 432-438], which showed how a Taylor-series expansion of the maximum-likelihood rotation function leads to improved likelihood-enhanced fast rotation functions. In a similar manner, it is shown here how linear and quadratic Taylor-series expansions and least-squares approximations of the maximum-likelihood translation function lead to likelihood-enhanced translation functions, which can be calculated by FFT and which are more sensitive to the correct translation than the traditional correlation-coefficient fast translation function. These likelihood-enhanced translation targets for molecular-replacement searches have been implemented in the program Phaser using the Computational Crystallography Toolbox (cctbx).

Mesh:

Substances:

Year:  2005        PMID: 15805601     DOI: 10.1107/S0907444905001617

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  985 in total

1.  An unprecedented nucleic acid capture mechanism for excision of DNA damage.

Authors:  Emily H Rubinson; A S Prakasha Gowda; Thomas E Spratt; Barry Gold; Brandt F Eichman
Journal:  Nature       Date:  2010-10-03       Impact factor: 49.962

2.  Structural and biochemical characterization of linear dinucleotide analogues bound to the c-di-GMP-I aptamer.

Authors:  Kathryn D Smith; Sarah V Lipchock; Scott A Strobel
Journal:  Biochemistry       Date:  2011-12-27       Impact factor: 3.162

3.  Purification, crystallization and preliminary X-ray characterization of a human mitochondrial phenylalanyl-tRNA synthetase.

Authors:  Inna Levin; Naama Kessler; Nina Moor; Liron Klipcan; Emine Koc; Paul Templeton; Linda Spremulli; Mark Safro
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-08-25

4.  Structural basis for activation of fatty acid-binding protein 4.

Authors:  Richard E Gillilan; Stephen D Ayers; Noa Noy
Journal:  J Mol Biol       Date:  2007-08-02       Impact factor: 5.469

5.  Crystallization and X-ray structure of full-length recombinant human butyrylcholinesterase.

Authors:  Michelle N Ngamelue; Kohei Homma; Oksana Lockridge; Oluwatoyin A Asojo
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-08-10

6.  Conformational changes within the HLA-A1:MAGE-A1 complex induced by binding of a recombinant antibody fragment with TCR-like specificity.

Authors:  Pravin Kumar; Ardeschir Vahedi-Faridi; Wolfram Saenger; Andreas Ziegler; Barbara Uchanska-Ziegler
Journal:  Protein Sci       Date:  2009-01       Impact factor: 6.725

7.  Structural and functional characterization of 2-oxo-histidine in oxidized PerR protein.

Authors:  Daouda A K Traoré; Abdelnasser El Ghazouani; Lilian Jacquamet; Franck Borel; Jean-Luc Ferrer; David Lascoux; Jean-Luc Ravanat; Michel Jaquinod; Geneviève Blondin; Christelle Caux-Thang; Victor Duarte; Jean-Marc Latour
Journal:  Nat Chem Biol       Date:  2008-12-14       Impact factor: 15.040

8.  Structural insights into the substrate binding and stereoselectivity of giardia fructose-1,6-bisphosphate aldolase.

Authors:  Andrey Galkin; Zhimin Li; Ling Li; Liudmila Kulakova; Lipika R Pal; Debra Dunaway-Mariano; Osnat Herzberg
Journal:  Biochemistry       Date:  2009-04-14       Impact factor: 3.162

9.  Structure and function of GlmU from Mycobacterium tuberculosis.

Authors:  Zhening Zhang; Esther M M Bulloch; Richard D Bunker; Edward N Baker; Christopher J Squire
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-02-20

10.  Autotransporter structure reveals intra-barrel cleavage followed by conformational changes.

Authors:  Travis J Barnard; Nathalie Dautin; Petra Lukacik; Harris D Bernstein; Susan K Buchanan
Journal:  Nat Struct Mol Biol       Date:  2007-11-11       Impact factor: 15.369

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.