Literature DB >> 31108498

Late steps in bacterial translation initiation visualized using time-resolved cryo-EM.

Sandip Kaledhonkar1, Ziao Fu2, Kelvin Caban3, Wen Li1, Bo Chen1, Ming Sun4, Ruben L Gonzalez5, Joachim Frank6,7.   

Abstract

The initiation of bacterial translation involves the tightly regulated joining of the 50S ribosomal subunit to an initiator transfer RNA (fMet-tRNAfMet)-containing 30S ribosomal initiation complex to form a 70S initiation complex, which subsequently matures into a 70S elongation-competent complex. Rapid and accurate formation of the 70S initiation complex is promoted by initiation factors, which must dissociate from the 30S initiation complex before the resulting 70S elongation-competent complex can begin the elongation of translation1. Although comparisons of the structures of the 30S2-5 and 70S4,6-8 initiation complexes have revealed that the ribosome, initiation factors and fMet-tRNAfMet can acquire different conformations in these complexes, the timing of conformational changes during formation of the 70S initiation complex, the structures of any intermediates formed during these rearrangements, and the contributions that these dynamics might make to the mechanism and regulation of initiation remain unknown. Moreover, the absence of a structure of the 70S elongation-competent complex formed via an initiation-factor-catalysed reaction has precluded an understanding of the rearrangements to the ribosome, initiation factors and fMet-tRNAfMet that occur during maturation of a 70S initiation complex into a 70S elongation-competent complex. Here, using time-resolved cryogenic electron microscopy9, we report the near-atomic-resolution view of how a time-ordered series of conformational changes drive and regulate subunit joining, initiation factor dissociation and fMet-tRNAfMet positioning during formation of the 70S elongation-competent complex. Our results demonstrate the power of time-resolved cryogenic electron microscopy to determine how a time-ordered series of conformational changes contribute to the mechanism and regulation of one of the most fundamental processes in biology.

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Mesh:

Year:  2019        PMID: 31108498      PMCID: PMC7060745          DOI: 10.1038/s41586-019-1249-5

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  36 in total

1.  Single-molecule FRET methods to study the dynamics of proteins at work.

Authors:  Hisham Mazal; Gilad Haran
Journal:  Curr Opin Biomed Eng       Date:  2019-08-23

2.  eIF5B and eIF1A reorient initiator tRNA to allow ribosomal subunit joining.

Authors:  Rosslyn Grosely; Masaaki Sokabe; Christopher P Lapointe; Carlos Alvarado; Jinfan Wang; Elizabeth Montabana; Nancy Villa; Byung-Sik Shin; Thomas E Dever; Christopher S Fraser; Israel S Fernández; Joseph D Puglisi
Journal:  Nature       Date:  2022-06-22       Impact factor: 69.504

3.  Molecular architecture of 40S translation initiation complexes on the hepatitis C virus IRES.

Authors:  Zuben P Brown; Irina S Abaeva; Swastik De; Christopher U T Hellen; Tatyana V Pestova; Joachim Frank
Journal:  EMBO J       Date:  2022-07-13       Impact factor: 14.012

4.  Direct epitranscriptomic regulation of mammalian translation initiation through N4-acetylcytidine.

Authors:  Daniel Arango; David Sturgill; Renbin Yang; Tapan Kanai; Paulina Bauer; Jyoti Roy; Ziqiu Wang; Masaki Hosogane; Sarah Schiffers; Shalini Oberdoerffer
Journal:  Mol Cell       Date:  2022-06-08       Impact factor: 19.328

5.  Translation initiation site of mRNA is selected through dynamic interaction with the ribosome.

Authors:  Yi-Lan Chen; Jin-Der Wen
Journal:  Proc Natl Acad Sci U S A       Date:  2022-05-23       Impact factor: 12.779

Review 6.  Selective Modulation of Dynamic Protein Complexes.

Authors:  Julie M Garlick; Anna K Mapp
Journal:  Cell Chem Biol       Date:  2020-08-11       Impact factor: 8.116

7.  Structural basis for ribosome recycling by RRF and tRNA.

Authors:  Dejian Zhou; Takehito Tanzawa; Jinzhong Lin; Matthieu G Gagnon
Journal:  Nat Struct Mol Biol       Date:  2019-12-23       Impact factor: 18.361

Review 8.  Understanding the invisible hands of sample preparation for cryo-EM.

Authors:  Giulia Weissenberger; Rene J M Henderikx; Peter J Peters
Journal:  Nat Methods       Date:  2021-05-07       Impact factor: 47.990

9.  Substrate recognition and cryo-EM structure of the ribosome-bound TAC toxin of Mycobacterium tuberculosis.

Authors:  Moise Mansour; Emmanuel Giudice; Xibing Xu; Hatice Akarsu; Patricia Bordes; Valérie Guillet; Donna-Joe Bigot; Nawel Slama; Gaetano D'urso; Sophie Chat; Peter Redder; Laurent Falquet; Lionel Mourey; Reynald Gillet; Pierre Genevaux
Journal:  Nat Commun       Date:  2022-05-12       Impact factor: 17.694

Review 10.  Assessing the Role of Lipids in the Molecular Mechanism of Membrane Proteins.

Authors:  Léni Jodaitis; Thomas van Oene; Chloé Martens
Journal:  Int J Mol Sci       Date:  2021-07-06       Impact factor: 5.923

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