Literature DB >> 31106942

Fetal cortical surface atlas parcellation based on growth patterns.

Jing Xia1,2, Fan Wang2, Oualid M Benkarim3, Gerard Sanroma3,4, Gemma Piella3, Miguel A González Ballester3,5, Nadine Hahner6, Elisenda Eixarch6,7, Caiming Zhang8,9, Dinggang Shen2,10, Gang Li2.   

Abstract

Defining anatomically and functionally meaningful parcellation maps on cortical surface atlases is of great importance in surface-based neuroimaging analysis. The conventional cortical parcellation maps are typically defined based on anatomical cortical folding landmarks in adult surface atlases. However, they are not suitable for fetal brain studies, due to dramatic differences in brain size, shape, and properties between adults and fetuses. To address this issue, we propose a novel data-driven method for parcellation of fetal cortical surface atlases into distinct regions based on the dynamic "growth patterns" of cortical properties (e.g., surface area) from a population of fetuses. Our motivation is that the growth patterns of cortical properties indicate the underlying rapid changes of microstructures, which determine the molecular and functional principles of the cortex. Thus, growth patterns are well suitable for defining distinct cortical regions in development, structure, and function. To comprehensively capture the similarities of cortical growth patterns among vertices, we construct two complementary similarity matrices. One is directly based on the growth trajectories of vertices, and the other is based on the correlation profiles of vertices' growth trajectories in relation to a set of reference points. Then, we nonlinearly fuse these two similarity matrices into a single one, which can better capture both their common and complementary information than by simply averaging them. Finally, based on this fused similarity matrix, we perform spectral clustering to divide the fetal cortical surface atlases into distinct regions. By applying our method on 25 normal fetuses from 26 to 29 gestational weeks, we construct age-specific fetal cortical surface atlases equipped with biologically meaningful parcellation maps based on cortical growth patterns. Importantly, our generated parcellation maps reveal spatially contiguous, hierarchical and bilaterally relatively symmetric patterns of fetal cortical surface development.
© 2019 Wiley Periodicals, Inc.

Entities:  

Keywords:  fetal cortical atlas; growth pattern; parcellation

Mesh:

Year:  2019        PMID: 31106942      PMCID: PMC6865595          DOI: 10.1002/hbm.24637

Source DB:  PubMed          Journal:  Hum Brain Mapp        ISSN: 1065-9471            Impact factor:   5.038


  59 in total

Review 1.  The development of cerebral connections during the first 20-45 weeks' gestation.

Authors:  Ivica Kostović; Natasa Jovanov-Milosević
Journal:  Semin Fetal Neonatal Med       Date:  2006-09-07       Impact factor: 3.926

Review 2.  Receptor mapping: architecture of the human cerebral cortex.

Authors:  Karl Zilles; Katrin Amunts
Journal:  Curr Opin Neurol       Date:  2009-08       Impact factor: 5.710

3.  Measuring and comparing brain cortical surface area and other areal quantities.

Authors:  Anderson M Winkler; Mert R Sabuncu; B T Thomas Yeo; Bruce Fischl; Douglas N Greve; Peter Kochunov; Thomas E Nichols; John Blangero; David C Glahn
Journal:  Neuroimage       Date:  2012-03-15       Impact factor: 6.556

Review 4.  Mapping fetal brain development in utero using magnetic resonance imaging: the Big Bang of brain mapping.

Authors:  Colin Studholme
Journal:  Annu Rev Biomed Eng       Date:  2011-08-15       Impact factor: 9.590

5.  Gyral development of the human brain.

Authors:  J G Chi; E C Dooling; F H Gilles
Journal:  Ann Neurol       Date:  1977-01       Impact factor: 10.422

Review 6.  Proliferation and apoptosis in the developing human neocortex.

Authors:  Wood Yee Chan; Dietrich E Lorke; Sau Cheung Tiu; David T Yew
Journal:  Anat Rec       Date:  2002-08-01

7.  Dynamic patterns of cortical expansion during folding of the preterm human brain.

Authors:  Kara E Garcia; Emma C Robinson; Dimitrios Alexopoulos; Donna L Dierker; Matthew F Glasser; Timothy S Coalson; Cynthia M Ortinau; Daniel Rueckert; Larry A Taber; David C Van Essen; Cynthia E Rogers; Christopher D Smyser; Philip V Bayly
Journal:  Proc Natl Acad Sci U S A       Date:  2018-03-05       Impact factor: 11.205

8.  Reconstruction of fetal brain MRI with intensity matching and complete outlier removal.

Authors:  Maria Kuklisova-Murgasova; Gerardine Quaghebeur; Mary A Rutherford; Joseph V Hajnal; Julia A Schnabel
Journal:  Med Image Anal       Date:  2012-08-09       Impact factor: 8.545

9.  Parcellating cortical functional networks in individuals.

Authors:  Danhong Wang; Randy L Buckner; Michael D Fox; Daphne J Holt; Avram J Holmes; Sophia Stoecklein; Georg Langs; Ruiqi Pan; Tianyi Qian; Kuncheng Li; Justin T Baker; Steven M Stufflebeam; Kai Wang; Xiaomin Wang; Bo Hong; Hesheng Liu
Journal:  Nat Neurosci       Date:  2015-11-09       Impact factor: 24.884

10.  SPANOL (SPectral ANalysis of Lobes): A Spectral Clustering Framework for Individual and Group Parcellation of Cortical Surfaces in Lobes.

Authors:  Julien Lefèvre; Antonietta Pepe; Jennifer Muscato; Francois De Guio; Nadine Girard; Guillaume Auzias; David Germanaud
Journal:  Front Neurosci       Date:  2018-05-31       Impact factor: 4.677

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  7 in total

1.  A novel approach to multiple anatomical shape analysis: Application to fetal ventriculomegaly.

Authors:  Oualid Benkarim; Gemma Piella; Islem Rekik; Nadine Hahner; Elisenda Eixarch; Dinggang Shen; Gang Li; Miguel Angel González Ballester; Gerard Sanroma
Journal:  Med Image Anal       Date:  2020-06-10       Impact factor: 8.545

2.  Fetal cortical surface atlas parcellation based on growth patterns.

Authors:  Jing Xia; Fan Wang; Oualid M Benkarim; Gerard Sanroma; Gemma Piella; Miguel A González Ballester; Nadine Hahner; Elisenda Eixarch; Caiming Zhang; Dinggang Shen; Gang Li
Journal:  Hum Brain Mapp       Date:  2019-05-20       Impact factor: 5.038

3.  Anatomy-Guided Convolutional Neural Network for Motion Correction in Fetal Brain MRI.

Authors:  Yuchen Pei; Lisheng Wang; Fenqiang Zhao; Tao Zhong; Lufan Liao; Dinggang Shen; Gang Li
Journal:  Mach Learn Med Imaging       Date:  2020-09-29

4.  Construction of Spatiotemporal Infant Cortical Surface Functional Templates.

Authors:  Ying Huang; Fan Wang; Zhengwang Wu; Zengsi Chen; Han Zhang; Li Wang; Weili Lin; Dinggang Shen; Gang Li
Journal:  Med Image Comput Comput Assist Interv       Date:  2020-09-29

5.  Learning Spatiotemporal Probabilistic Atlas of Fetal Brains with Anatomically Constrained Registration Network.

Authors:  Yuchen Pei; Liangjun Chen; Fenqiang Zhao; Zhengwang Wu; Tao Zhong; Ya Wang; Changan Chen; Li Wang; He Zhang; Lisheng Wang; Gang Li
Journal:  Med Image Comput Comput Assist Interv       Date:  2021-09-21

6.  Mapping developmental regionalization and patterns of cortical surface area from 29 post-menstrual weeks to 2 years of age.

Authors:  Ying Huang; Zhengwang Wu; Fan Wang; Dan Hu; Tengfei Li; Lei Guo; Li Wang; Weili Lin; Gang Li
Journal:  Proc Natl Acad Sci U S A       Date:  2022-08-08       Impact factor: 12.779

Review 7.  "Plis de passage" Deserve a Role in Models of the Cortical Folding Process.

Authors:  Jean-François Mangin; Yann Le Guen; Nicole Labra; Antoine Grigis; Vincent Frouin; Miguel Guevara; Clara Fischer; Denis Rivière; William D Hopkins; Jean Régis; Zhong Yi Sun
Journal:  Brain Topogr       Date:  2019-10-03       Impact factor: 3.020

  7 in total

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