Literature DB >> 31102735

Fingerprinting Orientation Distribution Functions in diffusion MRI detects smaller crossing angles.

Steven H Baete1, Martijn A Cloos2, Ying-Chia Lin3, Dimitris G Placantonakis4, Timothy Shepherd3, Fernando E Boada3.   

Abstract

Diffusion tractography is routinely used to study white matter architecture and brain connectivity in vivo. A key step for successful tractography of neuronal tracts is the correct identification of tract directions in each voxel. Here we propose a fingerprinting-based methodology to identify these fiber directions in Orientation Distribution Functions, dubbed ODF-Fingerprinting (ODF-FP). In ODF-FP, fiber configurations are selected based on the similarity between measured ODFs and elements in a pre-computed library. In noisy ODFs, the library matching algorithm penalizes the more complex fiber configurations. ODF simulations and analysis of bootstrapped partial and whole-brain in vivo datasets show that the ODF-FP approach improves the detection of fiber pairs with small crossing angles while maintaining fiber direction precision, which leads to better tractography results. Rather than focusing on the ODF maxima, the ODF-FP approach uses the whole ODF shape to infer fiber directions to improve the detection of fiber bundles with small crossing angle. The resulting fiber directions aid tractography algorithms in accurately displaying neuronal tracts and calculating brain connectivity.
Copyright © 2019 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Crossing angle; Diffusion MRI; Fiber identification; Fiber tractography; Fingerprinting; Multi-shell Q-ball imaging; Orientation distribution function; Radial diffusion spectrum imaging

Mesh:

Year:  2019        PMID: 31102735      PMCID: PMC7336899          DOI: 10.1016/j.neuroimage.2019.05.024

Source DB:  PubMed          Journal:  Neuroimage        ISSN: 1053-8119            Impact factor:   6.556


  60 in total

1.  Resolving power for the diffusion orientation distribution function.

Authors:  Jens H Jensen; Joseph A Helpern
Journal:  Magn Reson Med       Date:  2015-10-07       Impact factor: 4.668

2.  Direct estimation of the fiber orientation density function from diffusion-weighted MRI data using spherical deconvolution.

Authors:  J-Donald Tournier; Fernando Calamante; David G Gadian; Alan Connelly
Journal:  Neuroimage       Date:  2004-11       Impact factor: 6.556

3.  Dissociating the human language pathways with high angular resolution diffusion fiber tractography.

Authors:  Stephen Frey; Jennifer S W Campbell; G Bruce Pike; Michael Petrides
Journal:  J Neurosci       Date:  2008-11-05       Impact factor: 6.167

4.  Quantitative comparison of reconstruction methods for intra-voxel fiber recovery from diffusion MRI.

Authors:  Alessandro Daducci; Erick Jorge Canales-Rodríguez; Maxime Descoteaux; Eleftherios Garyfallidis; Yaniv Gur; Ying-Chia Lin; Merry Mani; Sylvain Merlet; Michael Paquette; Alonso Ramirez-Manzanares; Marco Reisert; Paulo Reis Rodrigues; Farshid Sepehrband; Emmanuel Caruyer; Jeiran Choupan; Rachid Deriche; Mathews Jacob; Gloria Menegaz; Vesna Prčkovska; Mariano Rivera; Yves Wiaux; Jean-Philippe Thiran
Journal:  IEEE Trans Med Imaging       Date:  2013-10-11       Impact factor: 10.048

5.  Hollow Polypropylene Yarns as a Biomimetic Brain Phantom for the Validation of High-Definition Fiber Tractography Imaging.

Authors:  Catarina Guise; Margarida M Fernandes; João M Nóbrega; Sudhir Pathak; Walter Schneider; Raul Fangueiro
Journal:  ACS Appl Mater Interfaces       Date:  2016-10-25       Impact factor: 9.229

6.  AN OVER-COMPLETE DICTIONARY BASED REGULARIZED RECONSTRUCTION OF A FIELD OF ENSEMBLE AVERAGE PROPAGATORS.

Authors:  Wenxing Ye; Baba C Vemuri; Alireza Entezari
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2012-05-02

7.  Towards microstructure fingerprinting: Estimation of tissue properties from a dictionary of Monte Carlo diffusion MRI simulations.

Authors:  Gaëtan Rensonnet; Benoît Scherrer; Gabriel Girard; Aleksandar Jankovski; Simon K Warfield; Benoît Macq; Jean-Philippe Thiran; Maxime Taquet
Journal:  Neuroimage       Date:  2018-09-30       Impact factor: 6.556

8.  Accelerated diffusion spectrum imaging with compressed sensing using adaptive dictionaries.

Authors:  Berkin Bilgic; Kawin Setsompop; Julien Cohen-Adad; Anastasia Yendiki; Lawrence L Wald; Elfar Adalsteinsson
Journal:  Magn Reson Med       Date:  2012-09-24       Impact factor: 4.668

9.  Radial q-space sampling for DSI.

Authors:  Steven H Baete; Stephen Yutzy; Fernando E Boada
Journal:  Magn Reson Med       Date:  2015-09-12       Impact factor: 4.668

10.  Validation of tractography: Comparison with manganese tracing.

Authors:  Thomas R Knösche; Alfred Anwander; Matthew Liptrot; Tim B Dyrby
Journal:  Hum Brain Mapp       Date:  2015-07-14       Impact factor: 5.038

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  2 in total

1.  Performance of orientation distribution function-fingerprinting with a biophysical multicompartment diffusion model.

Authors:  Patryk Filipiak; Timothy Shepherd; Ying-Chia Lin; Dimitris G Placantonakis; Fernando E Boada; Steven H Baete
Journal:  Magn Reson Med       Date:  2022-02-28       Impact factor: 3.737

2.  Insights from the IronTract challenge: Optimal methods for mapping brain pathways from multi-shell diffusion MRI.

Authors:  Chiara Maffei; Gabriel Girard; Kurt G Schilling; Dogu Baran Aydogan; Nagesh Adluru; Andrey Zhylka; Ye Wu; Matteo Mancini; Andac Hamamci; Alessia Sarica; Achille Teillac; Steven H Baete; Davood Karimi; Fang-Cheng Yeh; Mert E Yildiz; Ali Gholipour; Yann Bihan-Poudec; Bassem Hiba; Andrea Quattrone; Aldo Quattrone; Tommy Boshkovski; Nikola Stikov; Pew-Thian Yap; Alberto de Luca; Josien Pluim; Alexander Leemans; Vivek Prabhakaran; Barbara B Bendlin; Andrew L Alexander; Bennett A Landman; Erick J Canales-Rodríguez; Muhamed Barakovic; Jonathan Rafael-Patino; Thomas Yu; Gaëtan Rensonnet; Simona Schiavi; Alessandro Daducci; Marco Pizzolato; Elda Fischi-Gomez; Jean-Philippe Thiran; George Dai; Giorgia Grisot; Nikola Lazovski; Santi Puch; Marc Ramos; Paulo Rodrigues; Vesna Prčkovska; Robert Jones; Julia Lehman; Suzanne N Haber; Anastasia Yendiki
Journal:  Neuroimage       Date:  2022-05-26       Impact factor: 7.400

  2 in total

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