Literature DB >> 23227275

AN OVER-COMPLETE DICTIONARY BASED REGULARIZED RECONSTRUCTION OF A FIELD OF ENSEMBLE AVERAGE PROPAGATORS.

Wenxing Ye1, Baba C Vemuri, Alireza Entezari.   

Abstract

In this paper we present a dictionary-based framework for the reconstruction of a field of ensemble average propagators (EAPs), given a high angular resolution diffusion MRI data set. Existing techniques often consider voxel-wise reconstruction of the EAP field thereby leading to a noisy reconstruction across the field. We present a dictionary learning framework for achieving a smooth EAP reconstruction across the field wherein, the dictionary atoms are learned from the data via an initial regression using adaptive spline kernels. The formulation involves a two stage optimization where the first stage involves optimizing for a sparse dictionary using a K-SVD based updating and the second stage involves a quadratic cost function optimization with a non-local means based regularization across the field. The novelty lies in a dictionary based reconstruction as well as an NLM-based regularization that helps preserving features in the reconstructed field. We document experimental results on synthetic data from crossing fibers and real optic chiasm data set that demonstrate the advantages of the proposed approach.

Entities:  

Year:  2012        PMID: 23227275      PMCID: PMC3515658          DOI: 10.1109/ISBI.2012.6235711

Source DB:  PubMed          Journal:  Proc IEEE Int Symp Biomed Imaging        ISSN: 1945-7928


  9 in total

1.  High angular resolution diffusion imaging reveals intravoxel white matter fiber heterogeneity.

Authors:  David S Tuch; Timothy G Reese; Mette R Wiegell; Nikos Makris; John W Belliveau; Van J Wedeen
Journal:  Magn Reson Med       Date:  2002-10       Impact factor: 4.668

2.  Direct estimation of the fiber orientation density function from diffusion-weighted MRI data using spherical deconvolution.

Authors:  J-Donald Tournier; Fernando Calamante; David G Gadian; Alan Connelly
Journal:  Neuroimage       Date:  2004-11       Impact factor: 6.556

3.  A unified computational framework for deconvolution to reconstruct multiple fibers from diffusion weighted MRI.

Authors:  Bing Jian; Baba C Vemuri
Journal:  IEEE Trans Med Imaging       Date:  2007-11       Impact factor: 10.048

4.  Resolution of complex tissue microarchitecture using the diffusion orientation transform (DOT).

Authors:  Evren Ozarslan; Timothy M Shepherd; Baba C Vemuri; Stephen J Blackband; Thomas H Mareci
Journal:  Neuroimage       Date:  2006-03-20       Impact factor: 6.556

5.  BOX SPLINE BASED 3D TOMOGRAPHIC RECONSTRUCTION OF DIFFUSION PROPAGATORS FROM MRI DATA.

Authors:  Wenxing Ye; Sharon Portnoy; Alireza Entezari; Baba C Vemuri; Stephen J Blackband
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2011-03-30

6.  Estimation of the effective self-diffusion tensor from the NMR spin echo.

Authors:  P J Basser; J Mattiello; D LeBihan
Journal:  J Magn Reson B       Date:  1994-03

7.  Spatially regularized compressed sensing for high angular resolution diffusion imaging.

Authors:  Oleg Michailovich; Yogesh Rathi; Sudipto Dolui
Journal:  IEEE Trans Med Imaging       Date:  2011-05       Impact factor: 10.048

8.  Adaptive kernels for multi-fiber reconstruction.

Authors:  Angelos Barmpoutis; Bing Jian; Baba C Vemuri
Journal:  Inf Process Med Imaging       Date:  2009

9.  Diffusion propagator imaging: using Laplace's equation and multiple shell acquisitions to reconstruct the diffusion propagator.

Authors:  Maxime Descoteaux; Rachid Deriche; Denis Le Bihan; Jean-François Mangin; Cyril Poupon
Journal:  Inf Process Med Imaging       Date:  2009
  9 in total
  4 in total

1.  Dictionary learning on the manifold of square root densities and application to reconstruction of diffusion propagator fields.

Authors:  Jiaqi Sun; Yuchen Xie; Wenxing Ye; Jeffrey Ho; Alireza Entezari; Stephen J Blackband; Baba C Vemuri
Journal:  Inf Process Med Imaging       Date:  2013

2.  Fingerprinting Orientation Distribution Functions in diffusion MRI detects smaller crossing angles.

Authors:  Steven H Baete; Martijn A Cloos; Ying-Chia Lin; Dimitris G Placantonakis; Timothy Shepherd; Fernando E Boada
Journal:  Neuroimage       Date:  2019-05-16       Impact factor: 6.556

3.  Estimation of the CSA-ODF using Bayesian compressed sensing of multi-shell HARDI.

Authors:  Julio M Duarte-Carvajalino; Christophe Lenglet; Junqian Xu; Essa Yacoub; Kamil Ugurbil; Steen Moeller; Lawrence Carin; Guillermo Sapiro
Journal:  Magn Reson Med       Date:  2013-12-12       Impact factor: 4.668

4.  Dictionary-based fiber orientation estimation with improved spatial consistency.

Authors:  Chuyang Ye; Jerry L Prince
Journal:  Med Image Anal       Date:  2017-11-23       Impact factor: 8.545

  4 in total

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