Literature DB >> 24132007

Quantitative comparison of reconstruction methods for intra-voxel fiber recovery from diffusion MRI.

Alessandro Daducci, Erick Jorge Canales-Rodríguez, Maxime Descoteaux, Eleftherios Garyfallidis, Yaniv Gur, Ying-Chia Lin, Merry Mani, Sylvain Merlet, Michael Paquette, Alonso Ramirez-Manzanares, Marco Reisert, Paulo Reis Rodrigues, Farshid Sepehrband, Emmanuel Caruyer, Jeiran Choupan, Rachid Deriche, Mathews Jacob, Gloria Menegaz, Vesna Prčkovska, Mariano Rivera, Yves Wiaux, Jean-Philippe Thiran.   

Abstract

Validation is arguably the bottleneck in the diffusion magnetic resonance imaging (MRI) community. This paper evaluates and compares 20 algorithms for recovering the local intra-voxel fiber structure from diffusion MRI data and is based on the results of the "HARDI reconstruction challenge" organized in the context of the "ISBI 2012" conference. Evaluated methods encompass a mixture of classical techniques well known in the literature such as diffusion tensor, Q-Ball and diffusion spectrum imaging, algorithms inspired by the recent theory of compressed sensing and also brand new approaches proposed for the first time at this contest. To quantitatively compare the methods under controlled conditions, two datasets with known ground-truth were synthetically generated and two main criteria were used to evaluate the quality of the reconstructions in every voxel: correct assessment of the number of fiber populations and angular accuracy in their orientation. This comparative study investigates the behavior of every algorithm with varying experimental conditions and highlights strengths and weaknesses of each approach. This information can be useful not only for enhancing current algorithms and develop the next generation of reconstruction methods, but also to assist physicians in the choice of the most adequate technique for their studies.

Mesh:

Year:  2013        PMID: 24132007     DOI: 10.1109/TMI.2013.2285500

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  50 in total

Review 1.  Challenges in diffusion MRI tractography - Lessons learned from international benchmark competitions.

Authors:  Kurt G Schilling; Alessandro Daducci; Klaus Maier-Hein; Cyril Poupon; Jean-Christophe Houde; Vishwesh Nath; Adam W Anderson; Bennett A Landman; Maxime Descoteaux
Journal:  Magn Reson Imaging       Date:  2018-11-29       Impact factor: 2.546

2.  Tractography reproducibility challenge with empirical data (TraCED): The 2017 ISMRM diffusion study group challenge.

Authors:  Vishwesh Nath; Kurt G Schilling; Prasanna Parvathaneni; Yuankai Huo; Justin A Blaber; Allison E Hainline; Muhamed Barakovic; David Romascano; Jonathan Rafael-Patino; Matteo Frigo; Gabriel Girard; Jean-Philippe Thiran; Alessandro Daducci; Matt Rowe; Paulo Rodrigues; Vesna Prčkovska; Dogu B Aydogan; Wei Sun; Yonggang Shi; William A Parker; Abdol A Ould Ismail; Ragini Verma; Ryan P Cabeen; Arthur W Toga; Allen T Newton; Jakob Wasserthal; Peter Neher; Klaus Maier-Hein; Giovanni Savini; Fulvia Palesi; Enrico Kaden; Ye Wu; Jianzhong He; Yuanjing Feng; Michael Paquette; Francois Rheault; Jasmeen Sidhu; Catherine Lebel; Alexander Leemans; Maxime Descoteaux; Tim B Dyrby; Hakmook Kang; Bennett A Landman
Journal:  J Magn Reson Imaging       Date:  2019-06-09       Impact factor: 4.813

3.  Estimation of white matter fiber parameters from compressed multiresolution diffusion MRI using sparse Bayesian learning.

Authors:  Pramod Kumar Pisharady; Stamatios N Sotiropoulos; Julio M Duarte-Carvajalino; Guillermo Sapiro; Christophe Lenglet
Journal:  Neuroimage       Date:  2017-06-29       Impact factor: 6.556

Review 4.  Advances in computational and statistical diffusion MRI.

Authors:  Lauren J O'Donnell; Alessandro Daducci; Demian Wassermann; Christophe Lenglet
Journal:  NMR Biomed       Date:  2017-11-14       Impact factor: 4.044

5.  Fingerprinting Orientation Distribution Functions in diffusion MRI detects smaller crossing angles.

Authors:  Steven H Baete; Martijn A Cloos; Ying-Chia Lin; Dimitris G Placantonakis; Timothy Shepherd; Fernando E Boada
Journal:  Neuroimage       Date:  2019-05-16       Impact factor: 6.556

6.  Fiber ball imaging.

Authors:  Jens H Jensen; G Russell Glenn; Joseph A Helpern
Journal:  Neuroimage       Date:  2015-10-01       Impact factor: 6.556

7.  Limits to anatomical accuracy of diffusion tractography using modern approaches.

Authors:  Kurt G Schilling; Vishwesh Nath; Colin Hansen; Prasanna Parvathaneni; Justin Blaber; Yurui Gao; Peter Neher; Dogu Baran Aydogan; Yonggang Shi; Mario Ocampo-Pineda; Simona Schiavi; Alessandro Daducci; Gabriel Girard; Muhamed Barakovic; Jonathan Rafael-Patino; David Romascano; Gaëtan Rensonnet; Marco Pizzolato; Alice Bates; Elda Fischi; Jean-Philippe Thiran; Erick J Canales-Rodríguez; Chao Huang; Hongtu Zhu; Liming Zhong; Ryan Cabeen; Arthur W Toga; Francois Rheault; Guillaume Theaud; Jean-Christophe Houde; Jasmeen Sidhu; Maxime Chamberland; Carl-Fredrik Westin; Tim B Dyrby; Ragini Verma; Yogesh Rathi; M Okan Irfanoglu; Cibu Thomas; Carlo Pierpaoli; Maxime Descoteaux; Adam W Anderson; Bennett A Landman
Journal:  Neuroimage       Date:  2018-10-11       Impact factor: 6.556

8.  The role of the arcuate and middle longitudinal fasciculi in speech perception in noise in adulthood.

Authors:  Pascale Tremblay; Maxime Perron; Isabelle Deschamps; Dan Kennedy-Higgins; Jean-Christophe Houde; Anthony Steven Dick; Maxime Descoteaux
Journal:  Hum Brain Mapp       Date:  2018-09-12       Impact factor: 5.038

9.  Empirical consideration of the effects of acquisition parameters and analysis model on clinically feasible q-ball imaging.

Authors:  Kurt G Schilling; Vishwesh Nath; Justin A Blaber; Prasanna Parvathaneni; Adam W Anderson; Bennett A Landman
Journal:  Magn Reson Imaging       Date:  2017-04-24       Impact factor: 2.546

10.  Probabilistic tractography using Lasso bootstrap.

Authors:  Chuyang Ye; Jerry L Prince
Journal:  Med Image Anal       Date:  2016-09-16       Impact factor: 8.545

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