Literature DB >> 31086427

Robust probabilistic classification applicable to irregularly sampled functional data.

Yeonjoo Park1, Douglas G Simpson1.   

Abstract

A robust probabilistic classifier for functional data is developed to predict class membership based on functional input measurements and to provide a reliable probability estimates for class membership. The method combines a Bayes classifier and semi-parametric mixed effects model with robust tuning parameter to make the method robust to outlying curves, and to improve the accuracy of the risk or uncertainty estimates, which is crucial in medical diagnostic applications. The approach applies to functional data with varying ranges and irregular sampling without making parametric assumptions on the within-curve covariance. Simulation studies evaluate the proposed method and competitors in terms of sensitivity to heavy tailed functional distributions and outlying curves. Classification performance is evaluated by both error rate and logloss, the latter of which imposes heavier penalties on highly confident errors than on less confident errors. Runtime experiments on the R implementation indicate that the proposed method scales well computationally. Illustrative applications include data from quantitative ultrasound analysis and phoneme recognition.

Entities:  

Keywords:  Bayes classifier; mixed effects model; probabilistic classification; robustness; t-model

Year:  2018        PMID: 31086427      PMCID: PMC6510497          DOI: 10.1016/j.csda.2018.08.001

Source DB:  PubMed          Journal:  Comput Stat Data Anal        ISSN: 0167-9473            Impact factor:   1.681


  9 in total

1.  Nonparametric mixed effects models for unequally sampled noisy curves.

Authors:  J A Rice; C O Wu
Journal:  Biometrics       Date:  2001-03       Impact factor: 2.571

2.  A Bayesian approach to functional-based multilevel modeling of longitudinal data: applications to environmental epidemiology.

Authors:  Kiros Berhane; Nuoo-Ting Molitor
Journal:  Biostatistics       Date:  2008-03-18       Impact factor: 5.899

3.  Penalized Functional Regression.

Authors:  Jeff Goldsmith; Jennifer Bobb; Ciprian M Crainiceanu; Brian Caffo; Daniel Reich
Journal:  J Comput Graph Stat       Date:  2011-12-01       Impact factor: 2.302

4.  Altered functional connectivity in early Alzheimer's disease: a resting-state fMRI study.

Authors:  Kun Wang; Meng Liang; Liang Wang; Lixia Tian; Xinqing Zhang; Kuncheng Li; Tianzi Jiang
Journal:  Hum Brain Mapp       Date:  2007-10       Impact factor: 5.038

5.  Quantitative Ultrasound Comparison of MAT and 4T1 Mammary Tumors in Mice and Rats Across Multiple Imaging Systems.

Authors:  Lauren A Wirtzfeld; Goutam Ghoshal; Ivan M Rosado-Mendez; Kibo Nam; Yeonjoo Park; Alexander D Pawlicki; Rita J Miller; Douglas G Simpson; James A Zagzebski; Michael L Oelze; Timothy J Hall; William D O'Brien
Journal:  J Ultrasound Med       Date:  2015-08       Impact factor: 2.153

6.  Robust classification of functional and quantitative image data using functional mixed models.

Authors:  Hongxiao Zhu; Philip J Brown; Jeffrey S Morris
Journal:  Biometrics       Date:  2012-06-06       Impact factor: 2.571

7.  Functional Generalized Additive Models.

Authors:  Mathew W McLean; Giles Hooker; Ana-Maria Staicu; Fabian Scheipl; David Ruppert
Journal:  J Comput Graph Stat       Date:  2014       Impact factor: 2.302

8.  Techniques and evaluation from a cross-platform imaging comparison of quantitative ultrasound parameters in an in vivo rodent fibroadenoma model.

Authors:  Lauren A Wirtzfeld; Kibo Nam; Yassin Labyed; Goutam Ghoshal; Alexander Haak; Ellora Sen-Gupta; Zhi He; Nathaniel R Hirtz; Rita J Miller; Sandhya Sarwate; Douglas G Simpson; James A Zagzebski; Timothy A Bigelow; Michael Oelze; Timothy J Hall; William D O'Brien
Journal:  IEEE Trans Ultrason Ferroelectr Freq Control       Date:  2013-07       Impact factor: 2.725

9.  Intraoperative optical coherence tomography for assessing human lymph nodes for metastatic cancer.

Authors:  Ryan M Nolan; Steven G Adie; Marina Marjanovic; Eric J Chaney; Fredrick A South; Guillermo L Monroy; Nathan D Shemonski; Sarah J Erickson-Bhatt; Ryan L Shelton; Andrew J Bower; Douglas G Simpson; Kimberly A Cradock; Z George Liu; Partha S Ray; Stephen A Boppart
Journal:  BMC Cancer       Date:  2016-02-23       Impact factor: 4.430

  9 in total
  1 in total

1.  A Phantom-Based Assessment of Repeatability and Reproducibility of Transvaginal Quantitative Ultrasound.

Authors:  Shi Chen; Barbara L McFarlin; Barbara T Meagher; Tara A Peters; Douglas G Simpson; William D O'Brien; Aiguo Han
Journal:  IEEE Trans Ultrason Ferroelectr Freq Control       Date:  2019-06-14       Impact factor: 2.725

  1 in total

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