Literature DB >> 22670567

Robust classification of functional and quantitative image data using functional mixed models.

Hongxiao Zhu1, Philip J Brown, Jeffrey S Morris.   

Abstract

This article introduces new methods for performing classification of complex, high-dimensional functional data using the functional mixed model (FMM) framework. The FMM relates a functional response to a set of predictors through functional fixed and random effects, which allows it to account for various factors and between-function correlations. The methods include training and prediction steps. In the training steps we train the FMM model by treating class designation as one of the fixed effects, and in the prediction steps we classify the new objects using posterior predictive probabilities of class. Through a Bayesian scheme, we are able to adjust for factors affecting both the functions and the class designations. While the methods can be used in any FMM framework, we provide details for two specific Bayesian approaches: the Gaussian, wavelet-based FMM (G-WFMM) and the robust, wavelet-based FMM (R-WFMM). Both methods perform modeling in the wavelet space, which yields parsimonious representations for the functions, and can naturally adapt to local features and complex nonstationarities in the functions. The R-WFMM allows potentially heavier tails for features of the functions indexed by particular wavelet coefficients, leading to a down-weighting of outliers that makes the method robust to outlying functions or regions of functions. The models are applied to a pancreatic cancer mass spectroscopy data set and compared with other recently developed functional classification methods.
© 2012, The International Biometric Society.

Entities:  

Mesh:

Year:  2012        PMID: 22670567      PMCID: PMC3443537          DOI: 10.1111/j.1541-0420.2012.01765.x

Source DB:  PubMed          Journal:  Biometrics        ISSN: 0006-341X            Impact factor:   2.571


  9 in total

1.  Functional mixed effects models.

Authors:  Wensheng Guo
Journal:  Biometrics       Date:  2002-03       Impact factor: 2.571

2.  AUTOMATED ANALYSIS OF QUANTITATIVE IMAGE DATA USING ISOMORPHIC FUNCTIONAL MIXED MODELS, WITH APPLICATION TO PROTEOMICS DATA.

Authors:  Jeffrey S Morris; Veerabhadran Baladandayuthapani; Richard C Herrick; Pietro Sanna; Howard Gutstein
Journal:  Ann Appl Stat       Date:  2011-01-01       Impact factor: 2.083

3.  Robust, Adaptive Functional Regression in Functional Mixed Model Framework.

Authors:  Hongxiao Zhu; Philip J Brown; Jeffrey S Morris
Journal:  J Am Stat Assoc       Date:  2011-09-01       Impact factor: 5.033

4.  Plasma protein profiling for diagnosis of pancreatic cancer reveals the presence of host response proteins.

Authors:  John M Koomen; Lichen Nancy Shih; Kevin R Coombes; Donghui Li; Lian-chun Xiao; Isaiah J Fidler; James L Abbruzzese; Ryuji Kobayashi
Journal:  Clin Cancer Res       Date:  2005-02-01       Impact factor: 12.531

5.  Feature extraction and quantification for mass spectrometry in biomedical applications using the mean spectrum.

Authors:  Jeffrey S Morris; Kevin R Coombes; John Koomen; Keith A Baggerly; Ryuji Kobayashi
Journal:  Bioinformatics       Date:  2005-01-26       Impact factor: 6.937

6.  Wavelet-based functional mixed models.

Authors:  Jeffrey S Morris; Raymond J Carroll
Journal:  J R Stat Soc Series B Stat Methodol       Date:  2006-04-01       Impact factor: 4.488

7.  Wavelet-based functional linear mixed models: an application to measurement error-corrected distributed lag models.

Authors:  Elizabeth J Malloy; Jeffrey S Morris; Sara D Adar; Helen Suh; Diane R Gold; Brent A Coull
Journal:  Biostatistics       Date:  2010-02-15       Impact factor: 5.899

8.  Penalized Functional Regression.

Authors:  Jeff Goldsmith; Jennifer Bobb; Ciprian M Crainiceanu; Brian Caffo; Daniel Reich
Journal:  J Comput Graph Stat       Date:  2011-12-01       Impact factor: 2.302

9.  A bayesian hierarchical model for classification with selection of functional predictors.

Authors:  Hongxiao Zhu; Marina Vannucci; Dennis D Cox
Journal:  Biometrics       Date:  2009-06-09       Impact factor: 2.571

  9 in total
  13 in total

1.  A Study of Mexican Free-Tailed Bat Chirp Syllables: Bayesian Functional Mixed Models for Nonstationary Acoustic Time Series.

Authors:  Josue G Martinez; Kirsten M Bohn; Raymond J Carroll; Jeffrey S Morris
Journal:  J Am Stat Assoc       Date:  2013-06-01       Impact factor: 5.033

2.  Comparison and Contrast of Two General Functional Regression Modeling Frameworks.

Authors:  Jeffrey S Morris
Journal:  Stat Modelling       Date:  2017-02-16       Impact factor: 2.039

3.  Identification of differentially methylated loci using wavelet-based functional mixed models.

Authors:  Wonyul Lee; Jeffrey S Morris
Journal:  Bioinformatics       Date:  2015-11-11       Impact factor: 6.937

4.  Bayesian function-on-function regression for multilevel functional data.

Authors:  Mark J Meyer; Brent A Coull; Francesco Versace; Paul Cinciripini; Jeffrey S Morris
Journal:  Biometrics       Date:  2015-03-18       Impact factor: 2.571

5.  Statistical Contributions to Bioinformatics: Design, Modeling, Structure Learning, and Integration.

Authors:  Jeffrey S Morris; Veerabhadran Baladandayuthapani
Journal:  Stat Modelling       Date:  2017-06-15       Impact factor: 2.039

6.  Predictive classification of correlated targets with application to detection of metastatic cancer using functional CT imaging.

Authors:  Yuan Wang; Brian P Hobbs; Jianhua Hu; Chaan S Ng; Kim-Anh Do
Journal:  Biometrics       Date:  2015-04-07       Impact factor: 2.571

7.  Robust probabilistic classification applicable to irregularly sampled functional data.

Authors:  Yeonjoo Park; Douglas G Simpson
Journal:  Comput Stat Data Anal       Date:  2018-08-11       Impact factor: 1.681

8.  Quantile Function on Scalar Regression Analysis for Distributional Data.

Authors:  Hojin Yang; Veerabhadran Baladandayuthapani; Arvind U K Rao; Jeffrey S Morris
Journal:  J Am Stat Assoc       Date:  2019-06-21       Impact factor: 5.033

9.  WAVELET-DOMAIN REGRESSION AND PREDICTIVE INFERENCE IN PSYCHIATRIC NEUROIMAGING.

Authors:  Philip T Reiss; Lan Huo; Yihong Zhao; Clare Kelly; R Todd Ogden
Journal:  Ann Appl Stat       Date:  2015-07-20       Impact factor: 2.083

10.  Statistical Methods for Proteomic Biomarker Discovery based on Feature Extraction or Functional Modeling Approaches.

Authors:  Jeffrey S Morris
Journal:  Stat Interface       Date:  2012-01-01       Impact factor: 0.582

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.