| Literature DB >> 31077410 |
Fiona L Mackie1, Bernadette C Baker2, Andrew D Beggs3, Agata Stodolna3, Rachel Katie Morris4, Mark D Kilby4.
Abstract
OBJECTIVE: MicroRNAs (miRNAs) are used as biomarkers in cardiovascular disease and cancer. miRNAs are involved in placental development but have not previously been investigated in twin-twin transfusion syndrome (TTTS). Our aim is to explore the miRNA profile of TTTS pregnancies.Entities:
Mesh:
Substances:
Year: 2019 PMID: 31077410 PMCID: PMC6771789 DOI: 10.1002/pd.5475
Source DB: PubMed Journal: Prenat Diagn ISSN: 0197-3851 Impact factor: 3.050
Investigation cohort demographic data
| Patient Number | Complication (Quintero Stage) | Maternal Age, y | Maternal Ethnicity | Parity | Maternal BMI, kg/m2 | GA at Blood Sampling, wk | Fetal Sex |
|---|---|---|---|---|---|---|---|
| 2001 | Nil | 24 | White European | 0 | 31.9 | 19+1 | Female |
| 2047 | TTTS (Stage 2) | 29 | White European | 1 | 29.4 | 20+0 | Female |
| 2002 | Nil | 27 | White European | 1 | 25.2 | 19+4 | Female |
| 2020 | TTTS (Stage 3R) | 33 | White European | 1 | 15.8 | 19+5 | Female |
| 2018 | Nil | 24 | White European | 0 | 24.7 | 20+0 | Female |
| 2027 | TTTS (Stage 3R) | 23 | White European | 1 | 32 | 20+3 | Male |
| 2022 | Nil | 28 | White European | 0 | 29.4 | 20+0 | Female |
| 2039 | TTTS (Stage 2) | 28 | White European | 0 | 19.6 | 20+2 | Female |
| 2043 | Nil | 29 | White European | 0 | 18.5 | 21+1 | Male |
| 2023 | TTTS (Stage 2) | 35 | White European | 0 | 25.1 | 20+2 | Male |
Abbreviations: BMI, body mass index; GA, gestational age; TTTS, twin‐twin transfusion syndrome.
This patient was excluded from analysis as a biological outlier due to natural variation in maternal miRNA.
Validation cohort demographic data
| Patient Number | Complication (Quintero Stage) | Maternal Age, y | Maternal Ethnicity | Parity | Maternal BMI, kg/m2 | GA at Blood Sampling, wk | Fetal Sex |
|---|---|---|---|---|---|---|---|
| 2015 | Nil | 42 | White European | 4 | 44.5 | 20+0 | Female |
| 2067 | TTTS (Stage 3) | 27 | White European | 1 | 35.7 | 19+4 | Female |
| 2045 | Nil | 20 | White European | 2 | 19.0 | 21+5 | Male |
| 2025 | TTTS (Stage 2) | 22 | White European | 2 | 18.3 | 20+4 | Male |
| 2068 | Nil | 36 | White European | 1 | 25.5 | 19+6 | Female |
| 2071 | TTTS (Stage 1) | 35 | White European | 1 | 22.7 | 20+0 | Female |
| 2094 | Nil | 30 | White European | 0 | 27.1 | 20+3 | Female |
| 2069 | TTTS (Stage 3) | 28 | White European | 1 | 23.5 | 20+1 | Female |
| 2104 | Nil | 36 | White European | 1 | 25.6 | 20+4 | Male |
| 2012 | TTTS (Stage 3) | 27 | White European | 3 | 23.5 | 20+1 | Male |
| 2108 | Nil | 34 | White European | 0 | 29.1 | 19+2 | Male |
| 2101 | TTTS (Stage 2) | 24 | White European | 1 | 23.9 | 21+0 | Female |
| 2112 | Nil | 36 | White European | 1 | 24.6 | 20+0 | Male |
| 2009 | TTTS (Stage 2) | 24 | White European | 1 | 27.6 | 19+4 | Male |
| 2086 | Nil | ||||||
| 2017 | TTTS (Stage 3) | 28 | White European | 4 | 29.8 | 21+3 | Female |
| 2124 (reference) | Nil | 28 | White European | 1 | 31.7 | 20+2 | Female |
| 2102 | TTTS (Stage 3) | 21 | White European | 0 | 28.6 | 19+1 | Male |
| 2013 | TTTS (Stage 3) | 20 | White European | 1 | 19.8 | 19+5 | Female |
Abbreviations: BMI, body mass index; GA, gestational age; TTTS, twin‐twin transfusion syndrome.
Patient excluded from analysis as insufficient miRNA.
Figure 1Heatmap of miRNA expression in all maternal serum samples from pregnancies with twin‐twin transfusion syndrome (TTTS) compared with matched controls with uncomplicated monochorionic diamniotic twin pregnancies [Colour figure can be viewed at wileyonlinelibrary.com]
Figure 2Principal component analysis (PCA) plot of top 50 miRNA with largest variation in expression across all maternal serum samples from pregnancies with twin‐twin transfusion syndrome (TTTS) compared with matched controls with uncomplicated monochorionic diamniotic twin pregnancies [Colour figure can be viewed at wileyonlinelibrary.com]
Figure 3Volcano plot comparing fold change of miRNA expression in maternal serum samples from pregnancies with twin‐twin transfusion syndrome (TTTS) compared with matched controls with uncomplicated monochorionic diamniotic twin pregnancies, after exclusion of one biological outlier. Red denotes miRNAs with statistically significant fold change difference in TTTS, and blue denotes miRNAs with no significant difference [Colour figure can be viewed at wileyonlinelibrary.com]
“Top 5” significantly upregulated miRNAs and downregulated miRNAs prior to Benjamini‐Hochberg correction, in pregnancies complicated by twin‐twin transfusion syndrome (TTTS), compared with control of uncomplicated monochorionic diamniotic twin pregnancies
| Assay | Average dCq TTTS (SD) | Average dCq Control (SD) | ddCq TTTS—Control | Fold Change TTTS/Control |
|
|---|---|---|---|---|---|
| hsa‐miR‐107 | 2.581 (−0.305) | 1.765 (0.209) | 0.816 | 1.761 | .002 |
| hsa‐miR‐519c‐3p | −3.212 (0.551) | −4.600 (0.373) | 1.388 | 2.618 | .003 |
| hsa‐miR‐551a | −2.259 (0.560) | −1.098 (0.219) | −1.160 | −2.235 | .007 |
| hsa‐let‐7b‐5p | 3.219 (0.366) | 2.299 (0.409) | 0.919 | 1.891 | .012 |
| hsa‐miR‐361‐5p | 1.196 (0.175) | 1.611 (0.191) | −0.416 | −1.334 | .014 |
| hsa‐miR‐140‐5p | 0.493 (0.145) | 1.303 (0.359) | −0.810 | −1.753 | .015 |
| hsa‐miR‐9‐5p | −6.594 (0.567) | −4.768 (0.529) | −1.826 | −3.545 | .015 |
| hsa‐miR‐135a‐5p | −6.030 (0.900) | −4.501 (0.331) | −1.529 | −2.886 | .016 |
| hsa‐miR‐517a‐3p | 0.695 (0.522) | −0.228 (0.404) | 0.923 | 1.896 | .020 |
| hsa‐miR‐33a‐3p | −4.193 (0.483) | −5.326 (0.608) | 1.133 | 2.193 | .024 |
Bayesian model of significant miRNAs in pregnancies complicated by twin‐twin transfusion syndrome, compared with uncomplicated monochorionic diamniotic twin pregnancies, unadjusted and adjusted for confounding factors
| logFC | AveExpr |
|
| Adj. |
| |
|---|---|---|---|---|---|---|
| (a) Unadjusted | ||||||
| hsa‐miR‐494‐3p | 10.78839 | 7.202803 | 5.912049 | .000116 | .01834 | −0.02452 |
| hsa‐miR‐204‐5p | 9.935406 | 6.635394 | 5.731394 | .00015 | .01834 | −0.15169 |
| hsa‐miR‐520c‐3p | 8.480225 | 4.711236 | 5.070715 | .0004 | .01834 | −0.66378 |
| hsa‐miR‐411‐5p | 9.925229 | 7.538905 | 4.817742 | .000592 | .01834 | −0.88045 |
| hsa‐miR‐181a‐2‐3p | 10.45718 | 8.027257 | 4.742297 | .000667 | .01834 | −0.94735 |
| hsa‐miR‐381‐3p | 10.75888 | 8.367614 | 4.601182 | .000834 | .01834 | −1.07533 |
| hsa‐miR‐518d‐3p | 10.82702 | 8.443192 | 4.579189 | .000864 | .01834 | −1.09561 |
| hsa‐miR‐369‐5p | 10.26154 | 7.965421 | 4.576583 | .000868 | .01834 | −1.09802 |
| hsa‐miR‐517‐5p | 10.31679 | 8.030072 | 4.552294 | .000902 | .01834 | −1.12054 |
| hsa‐miR‐10a‐5p | 10.44629 | 8.173513 | 4.503198 | .000976 | .01834 | −1.16638 |
| (b) Adjusted | ||||||
| hsa‐miR‐379‐5p | −186.379 | 6.396119 | −9.89661 | .002952 | .574946 | −4.59509 |
| hsa‐miR‐9‐5p | −197.243 | 7.054207 | −9.77597 | .003053 | .574946 | −4.59509 |
| hsa‐let‐7c‐5p | −81.7966 | 7.004665 | −7.37649 | .006547 | .574946 | −4.59509 |
| hsa‐miR‐577 | 205.4049 | 3.385849 | 6.465976 | .009306 | .574946 | −4.59509 |
| hsa‐miR‐503‐5p | −190.476 | 6.641287 | −5.89464 | .011881 | .574946 | −4.59509 |
| hsa‐miR‐589‐3p | 210.6642 | 7.959102 | 5.791917 | .012443 | .574946 | −4.59509 |
| hsa‐miR‐365b‐5p | −79.0397 | 2.389523 | −5.55616 | .013871 | .574946 | −4.59509 |
| hsa‐miR‐877‐3p | −81.4977 | 2.40734 | −5.14132 | .016964 | .574946 | −4.59509 |
| hsa‐miR‐219a‐2‐3p | 83.26375 | 1.219888 | 5.016209 | .018075 | .574946 | −4.59509 |
| hsa‐miR‐548d‐5p | 82.48287 | 1.208447 | 4.997538 | .018249 | .574946 | −4.59509 |
Adjusted for maternal age, BMI, ethnicity, parity, and gestational age at blood sampling.
Candidate miRNAs for validation
| miRNA | Fold Change in Investigation Cohort | Change in TTTS Maternal Serum Compared With Control | Number of Papers With Strong Evidence of Functional MTI | Functional MTI Target Genes | TTTS Biological Plausibility |
|---|---|---|---|---|---|
| hsa‐let‐7b‐5p | 1.89 | Upregulated | 42 | 34 | Upregulated in congestive heart failure |
| hsa‐miR‐17‐5p | 1.37 | Upregulated | 120 | 80 | Associated with angiogenesis |
| hsa‐miR‐107 | 1.76 | Upregulated | 49 | 38 | Upregulated in congestive heart failure, same gene targets as those involved in preeclampsia and spiral artery remodeling |
| hsa‐miR‐140‐5p | −1.75 | Downregulated | 37 | 30 | Downregulated in congestive heart failure |
| hsa‐miR‐223‐3p | −1.59 | Downregulated | 64 | 48 | Downregulated in stages 3 and 4 chronic kidney disease |
| hsa‐miR‐517a‐3p | 1.90 | Upregulated | 2 | 2 | Placenta‐specific miRNA |
| hsa‐miR‐519a‐3p | 2.48 | Upregulated | 12 | 9 | Placenta‐specific miRNA |
| hsa‐miR‐519c‐3p | 2.62 | Upregulated | 8 | 6 | Placenta‐specific miRNA |
Abbreviation: MTI, microRNA‐target interaction.
According to miRTarBase (Chou C, Shrestha S, Yang C, et al. miRTarBase update 2018: a resource for experimentally validated microRNA‐target interactions. Nucleic Acids Res. 2018;46(D1):D296‐302).
Figure 4Validation of candidate miRNAs. No significant difference between groups (n = 8 controls, and n = 8 TTTS pregnancies) (Wilcoxon signed‐rank test). Line represents median. miR‐451a used as reference
| Assay | Average dCq TTTS (SD) | Average dCq Control (SD) | ddCq TTTS—Control | Fold Change TTTS/Control |
| Benjamini‐Hochberg FDR |
|---|---|---|---|---|---|---|
| hsa‐miR‐107 | 2.581 (−0.305) | 1.765 (0.209) | 0.816 | 1.761 | .002 | 0.486 |
| hsa‐miR‐519c‐3p | −3.212 (0.551) | −4.600 (0.373) | 1.388 | 2.618 | .003 | 0.486 |
| hsa‐miR‐551a | −2.259 (0.560) | −1.098 (0.219) | −1.160 | −2.235 | .007 | 0.494 |
| hsa‐let‐7b‐5p | 3.219 (0.366) | 2.299 (0.409) | 0.919 | 1.891 | .012 | 0.494 |
| hsa‐miR‐361‐5p | 1.196 (0.175) | 1.611 (0.191) | −0.416 | −1.334 | .014 | 0.494 |
| hsa‐miR‐140‐5p | 0.493 (0.145) | 1.303 (0.359) | −0.810 | −1.753 | .015 | 0.494 |
| hsa‐miR‐9‐5p | −6.594 (0.567) | −4.768 (0.529) | −1.826 | −3.545 | .015 | 0.494 |
| hsa‐miR‐135a‐5p | −6.030 (0.900) | −4.501 (0.331) | −1.529 | −2.886 | .016 | 0.494 |
| hsa‐miR‐517a‐3p | 0.695 (0.522) | −0.228 (0.404) | 0.923 | 1.896 | .020 | 0.494 |
| hsa‐miR‐33a‐3p | −4.193 (0.483) | −5.326 (0.608) | 1.133 | 2.193 | .024 | 0.494 |
| hsa‐let‐7c‐5p | −0.032 (0.516) | −0.856 (0.361) | 0.823 | 1.769 | .026 | 0.494 |
| hsa‐miR‐519d‐3p | −0.868 (0.635) | −2.246 (0.770) | 1.377 | 2.598 | .029 | 0.494 |
| hsa‐miR‐128‐3p | −1.117 (0.250) | −0.460 (0.376) | −0.656 | −1.576 | .030 | 0.494 |
| hsa‐miR‐519a‐3p | −2.319 (0.743) | −3.632 (0.697) | 1.313 | 2.484 | .031 | 0.494 |
| hsa‐miR‐30b‐5p | 2.585 (0.147) | 1.908 (0.383) | 0.677 | 1.599 | .032 | 0.494 |
| hsa‐miR‐518c‐3p | −2.275 (1.176) | −3.958 (0.499) | 1.683 | 3.211 | .033 | 0.494 |
| hsa‐miR‐26b‐5p | 0.995 (0.578) | −0.262 (0.736) | 1.257 | 2.390 | .033 | 0.494 |
| hsa‐miR‐517c‐3p | −0.793 (0.602) | −1.828 (0.562) | 1.035 | 2.048 | .034 | 0.494 |
| hsa‐miR‐450a‐5p | −1.175 (0.684) | −0.224 (0.160) | −0.950 | −1.932 | .034 | 0.494 |
| hsa‐miR‐582‐3p | −3.722 (0.977) | −2.096 (0.877) | −1.627 | −3.088 | .035 | 0.494 |
| hsa‐miR‐99a‐5p | −0.643 (0.421) | −1.375 (0.411) | 0.732 | 1.661 | .036 | 0.494 |
| hsa‐miR‐26b‐3p | −4.091 (0.689) | −2.986 (0.609) | −1.105 | −2.151 | .039 | 0.494 |
| hsa‐miR‐151a‐5p | 1.935 (0.193) | 2.300 (0.219) | −0.365 | −1.288 | .039 | 0.494 |
| hsa‐let‐7d‐3p | 2.093 (0.480) | 2.724 (0.169) | −0.630 | −1.548 | .040 | 0.494 |
| hsa‐miR‐20b‐5p | −4.324 (0.561) | −6.309 (1.228) | 1.985 | 3.958 | .040 | 0.494 |
| hsa‐miR‐519b‐3p | −4.841 (0.552) | −6.357 (0.707) | 1.516 | 2.859 | .041 | 0.494 |
| hsa‐miR‐556‐3p | −5.746 (0.547) | −4.483 (0.489) | −1.262 | −2.399 | .041 | 0.494 |
| hsa‐miR‐144‐3p | 6.066 (0.566) | 5.028 (0.637) | 1.039 | 2.054 | .042 | 0.494 |
| hsa‐miR‐223‐3p | 9.903 (0.437) | 10.570 (0.373) | −0.667 | −1.588 | .043 | 0.494 |
| hsa‐miR‐17‐5p | −1.374 (0.353) | −1.832 (0.196) | 0.457 | 1.373 | .047 | 0.515 |
| hsa‐miR‐543 | −2.876 (0.797) | −1.899 (0.293) | −0.976 | −1.967 | .050 | 0.526 |