Literature DB >> 31073694

Structural properties of the seed bank and the two island diffusion.

Jochen Blath1, Eugenio Buzzoni1, Adrián González Casanova2,3, Maite Wilke-Berenguer4.   

Abstract

We investigate various aspects of the (biallelic) Wright-Fisher diffusion with seed bank in conjunction with and contrast to the two-island model analysed e.g. in Kermany et al. (Theor Popul Biol 74(3):226-232, 2008) and Nath and Griffiths (J Math Biol 31(8):841-851, 1993), including moments, stationary distribution and reversibility, for which our main tool is duality. Further, we show that the Wright-Fisher diffusion with seed bank can be reformulated as a one-dimensional stochastic delay differential equation, providing an elegant interpretation of the age structure in the seed bank also forward in time in the spirit of Kaj et al. (J Appl Probab 38(2):285-300, 2001). We also provide a complete boundary classification for this two-dimensional SDE using martingale-based reasoning known as McKean's argument.

Entities:  

Keywords:  Boundary classification; Duality; Reversibility; Seed bank coalescent; Stochastic delay differential equation; Two island model; Wright–Fisher diffusion

Mesh:

Year:  2019        PMID: 31073694     DOI: 10.1007/s00285-019-01360-5

Source DB:  PubMed          Journal:  J Math Biol        ISSN: 0303-6812            Impact factor:   2.259


  11 in total

1.  A coalescent dual process in a Moran model with genic selection, and the lambda coalescent limit.

Authors:  Alison M Etheridge; Robert C Griffiths; Jesse E Taylor
Journal:  Theor Popul Biol       Date:  2010-09       Impact factor: 1.570

2.  Evolution in Mendelian Populations.

Authors:  S Wright
Journal:  Genetics       Date:  1931-03       Impact factor: 4.562

3.  A coalescent dual process in a Moran model with genic selection.

Authors:  A M Etheridge; R C Griffiths
Journal:  Theor Popul Biol       Date:  2009-03-31       Impact factor: 1.570

4.  Joint stationary moments of a two-island diffusion model of population subdivision.

Authors:  Amir R R Kermany; Xiaowen Zhou; Donal A Hickey
Journal:  Theor Popul Biol       Date:  2008-07-26       Impact factor: 1.570

Review 5.  Microbial seed banks: the ecological and evolutionary implications of dormancy.

Authors:  Jay T Lennon; Stuart E Jones
Journal:  Nat Rev Microbiol       Date:  2011-02       Impact factor: 60.633

6.  Ancestral Processes with Selection

Authors: 
Journal:  Theor Popul Biol       Date:  1997-06       Impact factor: 1.570

7.  Genetic Variability Under the Seedbank Coalescent.

Authors:  Jochen Blath; Adrián González Casanova; Bjarki Eldon; Noemi Kurt; Maite Wilke-Berenguer
Journal:  Genetics       Date:  2015-05-07       Impact factor: 4.562

8.  A coalescent dual process for a Wright-Fisher diffusion with recombination and its application to haplotype partitioning.

Authors:  Robert C Griffiths; Paul A Jenkins; Sabin Lessard
Journal:  Theor Popul Biol       Date:  2016-09-01       Impact factor: 1.570

9.  The coalescent in two colonies with symmetric migration.

Authors:  H B Nath; R C Griffiths
Journal:  J Math Biol       Date:  1993       Impact factor: 2.259

Review 10.  Evolution with a seed bank: The population genetic consequences of microbial dormancy.

Authors:  William R Shoemaker; Jay T Lennon
Journal:  Evol Appl       Date:  2018-01-02       Impact factor: 5.183

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  1 in total

1.  Separation of timescales for the seed bank diffusion and its jump-diffusion limit.

Authors:  Jochen Blath; Eugenio Buzzoni; Adrián González Casanova; Maite Wilke Berenguer
Journal:  J Math Biol       Date:  2021-04-28       Impact factor: 2.259

  1 in total

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