Literature DB >> 20685218

A coalescent dual process in a Moran model with genic selection, and the lambda coalescent limit.

Alison M Etheridge1, Robert C Griffiths, Jesse E Taylor.   

Abstract

The genealogical structure of neutral populations in which reproductive success is highly-skewed has been the subject of many recent studies. Here we derive a coalescent dual process for a related class of continuous-time Moran models with viability selection. In these models, individuals can give birth to multiple offspring whose survival depends on both the parental genotype and the brood size. This extends the dual process construction for a multi-type Moran model with genic selection described in Etheridge and Griffiths (2009). We show that in the limit of infinite population size the non-neutral Moran models converge to a Markov jump process which we call the lamda-Fleming-Viot process with viability selection and we derive a coalescent dual for this process directly from the generator and as a limit from the Moran models. The dual is a branching-coalescing process similar to the Ancestral Selection Graph which follows the typed ancestry of genes backwards in time with real and virtual lineages. As an application, the transition functions of the non-neutral Moran and lamda-coalescent models are expressed as mixtures of the transition functions of the dual process.

Mesh:

Year:  2010        PMID: 20685218     DOI: 10.1016/j.tpb.2010.05.004

Source DB:  PubMed          Journal:  Theor Popul Biol        ISSN: 0040-5809            Impact factor:   1.570


  7 in total

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Authors:  Jochen Blath; Eugenio Buzzoni; Adrián González Casanova; Maite Wilke-Berenguer
Journal:  J Math Biol       Date:  2019-05-09       Impact factor: 2.259

2.  Selection-Like Biases Emerge in Population Models with Recurrent Jackpot Events.

Authors:  Oskar Hallatschek
Journal:  Genetics       Date:  2018-08-31       Impact factor: 4.562

3.  An ancestral recombination graph for diploid populations with skewed offspring distribution.

Authors:  Matthias Birkner; Jochen Blath; Bjarki Eldon
Journal:  Genetics       Date:  2012-11-12       Impact factor: 4.562

4.  Coalescent Processes with Skewed Offspring Distributions and Nonequilibrium Demography.

Authors:  Sebastian Matuszewski; Marcel E Hildebrandt; Guillaume Achaz; Jeffrey D Jensen
Journal:  Genetics       Date:  2017-11-10       Impact factor: 4.562

5.  The structure of allelic diversity in the presence of purifying selection.

Authors:  Michael M Desai; Lauren E Nicolaisen; Aleksandra M Walczak; Joshua B Plotkin
Journal:  Theor Popul Biol       Date:  2011-12-16       Impact factor: 1.570

6.  Dynamic sampling bias and overdispersion induced by skewed offspring distributions.

Authors:  Takashi Okada; Oskar Hallatschek
Journal:  Genetics       Date:  2021-12-10       Impact factor: 4.402

7.  Quantifying GC-Biased Gene Conversion in Great Ape Genomes Using Polymorphism-Aware Models.

Authors:  Rui Borges; Gergely J Szöllősi; Carolin Kosiol
Journal:  Genetics       Date:  2019-05-30       Impact factor: 4.562

  7 in total

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