Literature DB >> 33909136

Separation of timescales for the seed bank diffusion and its jump-diffusion limit.

Jochen Blath1, Eugenio Buzzoni1, Adrián González Casanova2, Maite Wilke Berenguer3.   

Abstract

We investigate scaling limits of the seed bank model when migration (to and from the seed bank) is 'slow' compared to reproduction. This is motivated by models for bacterial dormancy, where periods of dormancy can be orders of magnitude larger than reproductive times. Speeding up time, we encounter a separation of timescales phenomenon which leads to mathematically interesting observations, in particular providing a prototypical example where the scaling limit of a continuous diffusion will be a jump diffusion. For this situation, standard convergence results typically fail. While such a situation could in principle be attacked by the sophisticated analytical scheme of Kurtz (J Funct Anal 12:55-67, 1973), this will require significant technical efforts. Instead, in our situation, we are able to identify and explicitly characterise a well-defined limit via duality in a surprisingly non-technical way. Indeed, we show that moment duality is in a suitable sense stable under passage to the limit and allows a direct and intuitive identification of the limiting semi-group while at the same time providing a probabilistic interpretation of the model. We also obtain a general convergence strategy for continuous-time Markov chains in a separation of timescales regime, which is of independent interest.

Entities:  

Keywords:  Diffusion limits; Duality; Jump-diffusion; Separation of timescales; Strong seed bank; Two-island model

Year:  2021        PMID: 33909136      PMCID: PMC8081708          DOI: 10.1007/s00285-021-01596-0

Source DB:  PubMed          Journal:  J Math Biol        ISSN: 0303-6812            Impact factor:   2.259


  17 in total

1.  The coalescent and the genealogical process in geographically structured population.

Authors:  M Notohara
Journal:  J Math Biol       Date:  1990       Impact factor: 2.259

2.  Evolution in Mendelian Populations.

Authors:  S Wright
Journal:  Genetics       Date:  1931-03       Impact factor: 4.562

3.  Microbial awakenings.

Authors:  Slava S Epstein
Journal:  Nature       Date:  2009-02-26       Impact factor: 49.962

Review 4.  Microbial seed banks: the ecological and evolutionary implications of dormancy.

Authors:  Jay T Lennon; Stuart E Jones
Journal:  Nat Rev Microbiol       Date:  2011-02       Impact factor: 60.633

5.  Genetic Variability Under the Seedbank Coalescent.

Authors:  Jochen Blath; Adrián González Casanova; Bjarki Eldon; Noemi Kurt; Maite Wilke-Berenguer
Journal:  Genetics       Date:  2015-05-07       Impact factor: 4.562

6.  An ancestral recombination graph for diploid populations with skewed offspring distribution.

Authors:  Matthias Birkner; Jochen Blath; Bjarki Eldon
Journal:  Genetics       Date:  2012-11-12       Impact factor: 4.562

7.  Statistical tools for seed bank detection.

Authors:  Jochen Blath; Eugenio Buzzoni; Jere Koskela; Maite Wilke Berenguer
Journal:  Theor Popul Biol       Date:  2020-01-13       Impact factor: 1.570

Review 8.  Persistent bacterial infections and persister cells.

Authors:  Robert A Fisher; Bridget Gollan; Sophie Helaine
Journal:  Nat Rev Microbiol       Date:  2017-05-22       Impact factor: 60.633

Review 9.  Evolution with a seed bank: The population genetic consequences of microbial dormancy.

Authors:  William R Shoemaker; Jay T Lennon
Journal:  Evol Appl       Date:  2018-01-02       Impact factor: 5.183

Review 10.  Dormancy in cancer.

Authors:  Hiroko Endo; Masahiro Inoue
Journal:  Cancer Sci       Date:  2019-01-11       Impact factor: 6.716

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  1 in total

1.  Seed banks alter the molecular evolutionary dynamics of Bacillus subtilis.

Authors:  William R Shoemaker; Evgeniya Polezhaeva; Kenzie B Givens; Jay T Lennon
Journal:  Genetics       Date:  2022-05-31       Impact factor: 4.402

  1 in total

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