Literature DB >> 14516749

A protein contortionist: core mutations of GB1 that induce dimerization and domain swapping.

In-Ja L Byeon1, John M Louis, Angela M Gronenborn.   

Abstract

Immunoglobulin-binding domain B1 of streptococcal protein G (GB1), a small (56 residues), stable, single-domain protein, is one of the most extensively used model systems in the area of protein folding and design. Recently, NMR and X-ray structures of a quintuple GB1 core mutant (L5V/A26F/F30V/Y33F/A34F) that showed an unexpected, intertwined tetrameric architecture were determined. Here, we report the NMR structure of another mutant, derived from the tetramer by reverting the single amino acid position F26 back to the wild-type sequence A26. The structure reveals a domain-swapped dimer that involves exchange of the second beta-hairpin. The resulting overall structure comprises an eight-stranded beta-sheet whose concave side is covered by two alpha helices. The dimer dissociates into a partially folded, monomeric species with a dissociation constant of 93(+/-10)microM.

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Year:  2003        PMID: 14516749     DOI: 10.1016/s0022-2836(03)00928-8

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  29 in total

1.  A geometric arrangement algorithm for structure determination of symmetric protein homo-oligomers from NOEs and RDCs.

Authors:  Jeffrey W Martin; Anthony K Yan; Chris Bailey-Kellogg; Pei Zhou; Bruce R Donald
Journal:  J Comput Biol       Date:  2011-10-28       Impact factor: 1.479

2.  Domain swapping and amyloid fibril conformation.

Authors:  Patrick C A van der Wel
Journal:  Prion       Date:  2012-07-01       Impact factor: 3.931

3.  Experimental library screening demonstrates the successful application of computational protein design to large structural ensembles.

Authors:  Benjamin D Allen; Alex Nisthal; Stephen L Mayo
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-02       Impact factor: 11.205

Review 4.  The Landscape of Intertwined Associations in Homooligomeric Proteins.

Authors:  Shoshana J Wodak; Anatoly Malevanets; Stephen S MacKinnon
Journal:  Biophys J       Date:  2015-09-01       Impact factor: 4.033

Review 5.  Protein reconstitution and three-dimensional domain swapping: benefits and constraints of covalency.

Authors:  Jannette Carey; Stina Lindman; Mikael Bauer; Sara Linse
Journal:  Protein Sci       Date:  2007-11       Impact factor: 6.725

6.  Analysis of sub-tauc and supra-tauc motions in protein Gbeta1 using molecular dynamics simulations.

Authors:  Jennifer M Bui; Jörg Gsponer; Michele Vendruscolo; Christopher M Dobson
Journal:  Biophys J       Date:  2009-11-04       Impact factor: 4.033

7.  A graphical method for analyzing distance restraints using residual dipolar couplings for structure determination of symmetric protein homo-oligomers.

Authors:  Jeffrey W Martin; Anthony K Yan; Chris Bailey-Kellogg; Pei Zhou; Bruce R Donald
Journal:  Protein Sci       Date:  2011-04-27       Impact factor: 6.725

8.  Amyloid-like fibrils from a domain-swapping protein feature a parallel, in-register conformation without native-like interactions.

Authors:  Jun Li; Cody L Hoop; Ravindra Kodali; V N Sivanandam; Patrick C A van der Wel
Journal:  J Biol Chem       Date:  2011-06-28       Impact factor: 5.157

9.  (19)F NMR reveals multiple conformations at the dimer interface of the nonstructural protein 1 effector domain from influenza A virus.

Authors:  James M Aramini; Keith Hamilton; Li-Chung Ma; G V T Swapna; Paul G Leonard; John E Ladbury; Robert M Krug; Gaetano T Montelione
Journal:  Structure       Date:  2014-02-27       Impact factor: 5.006

10.  Controlling and quantifying protein concentration in Escherichia coli.

Authors:  Shannon L Speer; Alex J Guseman; Jon B Patteson; Brandie M Ehrmann; Gary J Pielak
Journal:  Protein Sci       Date:  2019-05-22       Impact factor: 6.725

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