| Literature DB >> 31015798 |
Chin-Man Wang1, Shu-Chun Tsai2, Jing-Chi Lin3, Yeong-Jian Jan Wu3, Jianming Wu4, Ji-Yih Chen3.
Abstract
Ankylosing spondylitis (AS) is a chronic inflammatory disease that leads to spinal ankylosis. The receptor activator of the nuclear factor-kappa (RANK), RANK ligand, and osteoprotegerin (OPG) (RANK/RANKL/OPG) pathway plays critical roles in bone metabolism and the immune system. The current study was aimed at investigating whether six single-nucleotide polymorphisms (SNPs) within the RANK, RANKL, and OPG genes essential for bone homeostasis are associated with AS. Genotype distributions, allele and haplotype frequencies, were compared between 1120 AS patients and 1435 healthy controls and among AS patients with stratification by syndesmophyte formation, onset age, and HLA-B27 positivity. We found that RANKL SNPs were associated with AS syndesmophyte formation. Notably, the RANKL SNP haplotype rs7984870C/rs9533155G/rs9525641C was negatively associated with AS susceptibility and appeared to protect against syndesmophyte formation in AS. Functionally, RANKL promoter SNPs (rs9525641 C/T and rs9533155 G/C) affected DNA-protein complex formation and promoter activity in promoter reporter analyses. The OPG SNP haplotype rs2073618G/rs3102735T was significantly associated with HLA-B27 negativity in AS patients. Furthermore, AS patients with syndesmophyte formation had significantly lower levels of soluble RANKL levels than those without syndesmophyte formation. Our data suggested a role for RANKL in AS susceptibility and severity.Entities:
Mesh:
Substances:
Year: 2019 PMID: 31015798 PMCID: PMC6446096 DOI: 10.1155/2019/8029863
Source DB: PubMed Journal: Mediators Inflamm ISSN: 0962-9351 Impact factor: 4.711
Association of RANK, RANKL, and OPG SNPs with AS susceptibility in Taiwanese.
| SNP | Risk allele frequency | Genotype frequency (%) |
|
| Test for the mode of inheritance unadjusted | Test for the mode of inheritance adjusted for sex | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
|
| OR (95% CI) |
|
| OR (95% CI) | |||||||||
| RANK rs1805034 CT | C |
|
|
| Additive | 0.0814 | 0.122 | 1.11 (0.99-1.25) | Additive | 0.0858 | 0.1287 | 1.11 (0.99-1.26) | ||
| Case | 745 (33.26%) | 121 (10.8%) | 503 (44.91%) | 496 (44.29%) | 0.0881 | 0.1322 | CC + CT vs TT | 0.0577 | 0.1387 | 1.16 (1-1.36) | CC + CT vs TT | 0.0651 | 0.0976 | 1.17 (0.99-1.37) |
| Control | 881 (30.96%) | 142 (9.98%) | 597 (41.95%) | 684 (48.07%) | CC vs CT + TT | 0.4963 | 0.5239 | 1.09 (0.85-1.41) | CC vs CT + TT | 0.4772 | 0.5727 | 1.1 (0.84-1.44) | ||
|
| ||||||||||||||
| RANKL rs7984870 CG | G |
|
|
| Additive | 0.0407 | 0.0922 | 1.12 (1.01-1.25) | Additive | 0.0517 | 0.1274 | 1.12 (1-1.26) | ||
| Case | 1203 (53.95%) | 235 (21.08%) | 557 (49.96%) | 323 (28.97%) | 0.0413 | 0.096 | GG + CG vs CC | 0.0694 | 0.1387 | 1.19 (0.99-1.44) | GG + CG vs CC | 0.0451 | 0.0976 | 1.22 (1.01-1.49) |
| Control | 1456 (51.05%) | 344 (24.12%) | 708 (49.65%) | 374 (26.23%) | GG vs CG + CC | 0.1244 | 0.2488 | 1.15 (0.96-1.37) | GG vs CG + CC | 0.2290 | 0.4616 | 1.12 (0.93-1.34) | ||
|
| ||||||||||||||
| RANKL rs9525641 CT | T |
|
|
| Additive | 0.0301 | 0.0922 | 1.13 (1.01-1.26) | Additive | 0.0487 | 0.1274 | 1.12 (1-1.26) | ||
| Case | 1204 (54.09%) | 235 (21.11%) | 552 (49.6%) | 326 (29.29%) | 0.0297 | 0.096 | TT + CT vs CC | 0.0651 | 0.1387 | 1.19 (0.99-1.44) | TT + CT vs CC | 0.0501 | 0.0976 | 1.22 (1-1.48) |
| Control | 1458 (51.01%) | 346 (24.21%) | 708 (49.55%) | 375 (26.24%) | TT vs CT + CC | 0.0881 | 0.2488 | 1.16 (0.98-1.39) | TT vs CT + CC | 0.1976 | 0.4616 | 1.13 (0.94-1.35) | ||
|
| ||||||||||||||
| RANKL rs9533155 GC | C |
|
|
| 0.048 | 0.096 | Additive | 0.0461 | 0.0922 | 1.12 (1-1.25) | Additive | 0.0637 | 0.1274 | 1.12 (0.99-1.25) |
| Case | 1241 (55.65%) | 219 (19.64%) | 551 (49.42%) | 345 (30.94%) | CC + GC vs GG | 0.1054 | 0.1581 | 1.17 (0.97-1.42) | CC + GC vs GG | 0.0613 | 0.0976 | 1.21 (0.99-1.48) | ||
| Control | 1508 (52.84%) | 318 (22.28%) | 710 (49.75%) | 399 (27.96%) | CC vs GC + GG | 0.1013 | 0.2488 | 1.15 (0.97-1.37) | CC vs GC + GG | 0.2308 | 0.4616 | 1.12 (0.93-1.33) | ||
|
| ||||||||||||||
| OPG rs3102735 CT | C |
|
|
| 0.5191 | 0.6229 | Additive | 0.5074 | 0.6089 | 1.05 (0.9-1.23) | Additive | 0.2826 | 0.3391 | 1.09 (0.93-1.29) |
| Case | 328 (14.72%) | 21 (1.89%) | 286 (25.67%) | 807 (72.44%) | CC + CT vs TT | 0.3413 | 0.393 | 1.09 (0.91-1.3) | CC + CT vs TT | 0.1699 | 0.2039 | 1.14 (0.95-1.37) | ||
| Control | 400 (14.06%) | 32 (2.25%) | 336 (23.63%) | 1054 (74.12%) | CC vs CT + TT | 0.5239 | 0.5239 | 0.83 (0.48-1.45) | CC vs CT + TT | 0.6071 | 0.6071 | 0.86 (0.48-1.53) | ||
|
| ||||||||||||||
| OPG rs2073618 CG | C |
|
|
| 0.7412 | 0.7412 | Additive | 0.7352 | 0.7352 | 1.02 (0.9-1.16) | Additive | 0.7789 | 0.7789 | 1.02 (0.89-1.17) |
| Case | 1705 (76.53%) | 659 (59.16%) | 387 (34.74%) | 68 (6.1%) | CC + CG vs GG | 0.3930 | 0.393 | 0.86 (0.62-1.21) | CC + CG vs GG | 0.3078 | 0.3078 | 0.83 (0.59-1.18) | ||
| Control | 2177 (76.12%) | 823 (57.55%) | 531 (37.13%) | 76 (5.31%) | CC vs CG + GG | 0.4161 | 0.5239 | 1.07 (0.91-1.25) | CC vs CG + GG | 0.4124 | 0.5727 | 1.07 (0.91-1.26) | ||
∗ p trend: the p value from the Cochran-Armitage trend test with 100000 permutations.
Association of RANK, RANKL, and OPG SNPs with syndesmophyte formation in Taiwanese AS patients.
| SNP | Risk allele frequency | Genotype frequency (%) |
|
| Test for the mode of inheritance unadjusted | Test for the mode of inheritance adjusted for sex | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
|
| OR (95% CI) |
|
| OR (95% CI) | |||||||||
| RANK rs1805034 CT | T |
|
|
| Additive | 0.4892 | 0.7257 | 1.07 (0.89-1.27) | Additive | 0.4265 | 0.5118 | 1.08 (0.9-1.29) | ||
| Syndesmophyte+ | 655 (67.53%) | 53 (10.93%) | 209 (43.09%) | 223 (45.98%) | 0.4908 | 0.7362 | TT + CT vs CC | 0.9067 | 0.9067 | 0.98 (0.67-1.43) | TT + CT vs CC | 0.9552 | 0.9552 | 1.01 (0.69-1.49) |
| Syndesmophyte- | 840 (66.14%) | 68 (10.71%) | 294 (46.3%) | 273 (42.99%) | TT vs CT + CC | 0.3187 | 0.4781 | 1.13 (0.89-1.43) | TT vs CT + CC | 0.3042 | 0.4564 | 1.14 (0.89-1.45) | ||
| C |
|
|
| Additive | 0.3831 | 0.5746 | 1.07 (0.92-1.25) | Additive | 0.2630 | 0.3946 | 1.1 (0.93-1.3) | |||
| Syndesmophyte+ | 315 (32.47%) | 53 (10.93%) | 209 (43.09%) | 223 (45.98%) | 0.4009 | 0.6014 | CC + CT vs TT | 0.4265 | 0.6398 | 1.09 (0.89-1.34) | CC + CT vs TT | 0.3437 | 0.4173 | 1.11 (0.89-1.38) |
| Normal | 881 (30.96%) | 142 (9.98%) | 597 (41.95%) | 684 (48.07%) | CC vs CT + TT | 0.5514 | 0.6617 | 1.11 (0.79-1.54) | CC vs CT + TT | 0.3769 | 0.5557 | 1.18 (0.82-1.68) | ||
|
| ||||||||||||||
| RANKL rs7984870 CG | G |
|
|
| 0.0976 | 0.1952 | Additive | 0.0891 | 0.1781 | 1.16 (0.98-1.37) | Additive | 0.0724 | 0.1629 | 1.17 (0.99-1.39) |
| Syndesmophyte+ | 542 (55.99%) | 92 (19.01%) | 242 (50%) | 150 (30.99%) | GG + CG vs CC | 0.1385 | 0.296 | 1.25 (0.93-1.67) | GG + CG vs CC | 0.0975 | 0.2494 | 1.29 (0.96-1.74) | ||
| Syndesmophyte- | 661 (52.38%) | 143 (22.66%) | 315 (49.92%) | 173 (27.42%) | GG vs CG + CC | 0.1923 | 0.3847 | 1.19 (0.92-1.54) | GG vs CG + CC | 0.1951 | 0.4148 | 1.19 (0.91-1.56) | ||
| G |
|
|
| Additive | 0.0080 | 0.0164 | 1.22 (1.05-1.41) | Additive | 0.0141 | 0.0351 | 1.21 (1.04-1.42) | |||
| Syndesmophyte+ | 542 (55.99%) | 92 (19.01%) | 242 (50%) | 150 (30.99%) | 0.0083 | 0.022 | GG + CG vs CC | 0.0209 | 0.0563 | 1.35 (1.05-1.75) | GG + CG vs CC | 0.0120 |
| 1.42 (1.08-1.86) |
| Normal | 1456 (51.05%) | 344 (24.12%) | 708 (49.65%) | 374 (26.23%) | GG vs CG + CC | 0.0426 | 0.0852 | 1.26 (1.01-1.58) | GG vs CG + CC | 0.1222 | 0.2468 | 1.21 (0.95-1.54) | ||
|
| ||||||||||||||
| RANKL rs9525641 CT | T |
|
|
| Additive | 0.0776 | 0.1781 | 1.16 (0.98-1.38) | Additive | 0.0814 | 0.1629 | 1.17 (0.98-1.39) | ||
| Syndesmophyte+ | 542 (56.22%) | 92 (19.09%) | 238 (49.38%) | 152 (31.54%) | 0.074 | 0.1952 | TT + CT vs CC | 0.1480 | 0.296 | 1.24 (0.93-1.66) | TT + CT vs CC | 0.1247 | 0.2494 | 1.27 (0.94-1.71) |
| Syndesmophyte- | 662 (52.46%) | 143 (22.66%) | 314 (49.76%) | 174 (27.58%) | TT vs CT + CC | 0.1506 | 0.3847 | 1.21 (0.93-1.57) | TT vs CT + CC | 0.1851 | 0.4148 | 1.2 (0.92-1.56) | ||
| T |
|
|
| Additive | 0.0054 | 0.0164 | 1.23 (1.06-1.43) | Additive | 0.0118 | 0.0351 | 1.22 (1.05-1.42) | |||
| Syndesmophyte+ | 542 (56.22%) | 92 (19.09%) | 238 (49.38%) | 152 (31.54%) | 0.0064 | 0.022 | TT + CT vs CC | 0.0209 | 0.0563 | 1.35 (1.05-1.75) | TT + CT vs CC | 0.0141 |
| 1.4 (1.07-1.84) |
| Normal | 1458 (51.01%) | 346 (24.21%) | 708 (49.55%) | 375 (26.24%) | TT vs CT + CC | 0.0247 | 0.0852 | 1.29 (1.03-1.62) | TT vs CT + CC | 0.0888 | 0.2468 | 1.23 (0.97-1.56) | ||
|
| ||||||||||||||
| RANKL rs9533155 GC | C |
|
|
| 0.0825 | 0.1952 | Additive | 0.0809 | 0.1781 | 1.16 (0.98-1.38) | Additive | 0.0675 | 0.1629 | 1.18 (0.99-1.4) |
| Syndesmophyte+ | 559 (57.75%) | 85 (17.56%) | 239 (49.38%) | 160 (33.06%) | CC + GC vs GG | 0.1264 | 0.296 | 1.27 (0.94-1.71) | CC + GC vs GG | 0.0772 | 0.2494 | 1.32 (0.97-1.8) | ||
| Syndesmophyte- | 682 (54.04%) | 134 (21.24%) | 312 (49.45%) | 185 (29.32%) | CC vs GC + GG | 0.1808 | 0.3847 | 1.19 (0.92-1.53) | CC vs GC + GG | 0.2074 | 0.4148 | 1.18 (0.91-1.54) | ||
| C |
|
|
| Additive | 0.0082 | 0.0164 | 1.22 (1.05-1.41) | Additive | 0.0175 | 0.0351 | 1.21 (1.03-1.41) | |||
| Syndesmophyte+ | 559 (57.75%) | 85 (17.56%) | 239 (49.38%) | 160 (33.06%) | 0.011 | 0.022 | CC + GC vs GG | 0.0282 | 0.0563 | 1.35 (1.03-1.75) | CC + GC vs GG | 0.0163 |
| 1.41 (1.07-1.86) |
| Normal | 1508 (52.84%) | 318 (22.28%) | 710 (49.75%) | 399 (27.96%) | CC vs GC + GG | 0.0334 | 0.0852 | 1.27 (1.02-1.59) | CC vs GC + GG | 0.1234 | 0.2468 | 1.2 (0.95-1.52) | ||
|
| ||||||||||||||
| OPG rs3102735 CT | T |
|
|
| 0.8545 | 0.8545 | Additive | 0.8152 | 0.8152 | 1.03 (0.81-1.31) | Additive | 0.9277 | 0.9277 | 0.99 (0.77-1.26) |
| Syndesmophyte+ | 824 (85.48%) | 12 (2.49%) | 116 (24.07%) | 354 (73.44%) | TT + CT vs CC | 0.2008 | 0.3012 | 0.57 (0.24-1.35) | TT + CT vs CC | 0.1698 | 0.2546 | 0.53 (0.21-1.31) | ||
| Syndesmophyte- | 1076 (85.13%) | 9 (1.42%) | 170 (26.9%) | 453 (71.68%) | TT vs CT + CC | 0.5145 | 0.6174 | 1.09 (0.84-1.42) | TT vs CT + CC | 0.7467 | 0.7467 | 1.05 (0.8-1.37) | ||
| C |
|
|
| Additive | 0.7260 | 0.726 | 1.04 (0.85-1.27) | Additive | 0.4985 | 0.5982 | 1.08 (0.87-1.34) | |||
| Syndesmophyte+ | 140 (14.52%) | 12 (2.49%) | 116 (24.07%) | 354 (73.44%) | 0.7497 | 0.7497 | CC + CT vs TT | 0.7689 | 0.7689 | 1.04 (0.82-1.31) | CC + CT vs TT | 0.5220 | 0.522 | 1.09 (0.85-1.39) |
| Normal | 400 (14.06%) | 32 (2.25%) | 336 (23.63%) | 1054 (74.12%) | CC vs CT + TT | 0.7626 | 0.7626 | 1.11 (0.57-2.16) | CC vs CT + TT | 0.7035 | 0.7035 | 1.15 (0.56-2.36) | ||
|
| ||||||||||||||
| OPG rs2073618 CG | C |
|
|
| 0.6146 | 0.7375 | Additive | 0.6048 | 0.7257 | 1.05 (0.87-1.28) | Additive | 0.3549 | 0.5118 | 1.1 (0.9-1.34) |
| Syndesmophyte+ | 746 (77.07%) | 290 (59.92%) | 166 (34.3%) | 28 (5.79%) | CC + CG vs GG | 0.6986 | 0.8383 | 1.1 (0.67-1.81) | CC + CG vs GG | 0.4582 | 0.5498 | 1.21 (0.73-2) | ||
| Syndesmophyte- | 959 (76.11%) | 369 (58.57%) | 221 (35.08%) | 40 (6.35%) | CC vs CG + GG | 0.6508 | 0.6508 | 1.06 (0.83-1.34) | CC vs CG + GG | 0.4325 | 0.519 | 1.1 (0.86-1.41) | ||
| C |
|
|
| Additive | 0.5471 | 0.6565 | 1.05 (0.89-1.25) | Additive | 0.7931 | 0.7931 | 1.03 (0.85-1.23) | |||
| Syndesmophyte+ | 746 (77.07%) | 290 (59.92%) | 166 (34.3%) | 28 (5.79%) | 0.5674 | 0.6809 | CC + CG vs GG | 0.6932 | 0.7689 | 0.91 (0.59-1.42) | CC + CG vs GG | 0.3477 | 0.4173 | 0.79 (0.49-1.28) |
| Normal | 2177 (76.12%) | 823 (57.55%) | 531 (37.13%) | 76 (5.31%) | CC vs CG + GG | 0.3621 | 0.5431 | 1.1 (0.89-1.36) | CC vs CG + GG | 0.4631 | 0.5557 | 1.09 (0.87-1.36) | ||
∗ p trend: the p value from the Cochran-Armitage trend test with 100000 permutations.
Association of RANK, RANKL, and OPG SNPs with HLA-B27 in Taiwanese AS patients.
| SNP | Risk allele frequency | Genotype frequency (%) |
|
| Test for mode of inheritance unadjusted | Test for mode of inheritance adjusted for sex | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
|
| OR (95% CI) |
|
| OR (95% CI) | |||||||||
| RANK rs1805034 CT | T |
|
|
| Additive | 0.1468 | 0.4113 | 1.25 (0.93-1.69) | Additive | 0.1315 | 0.3764 | 1.27 (0.93-1.72) | ||
| B27 positive | 1372 (67.19%) | 109 (10.68%) | 452 (44.27%) | 460 (45.05%) | 0.1497 | 0.4491 | TT + CT vs CC | 0.6584 | 0.98 | 1.15 (0.61-2.17) | TT + CT vs CC | 0.5913 | 0.9876 | 1.19 (0.63-2.25) |
| B27 negative | 123 (62.12%) | 12 (12.12%) | 51 (51.52%) | 36 (36.36%) | TT vs CT + CC | 0.0980 | 0.2007 | 1.43 (0.94-2.2) | TT vs CT + CC | 0.0954 | 0.2161 | 1.44 (0.94-2.21) | ||
| C |
|
|
| Additive | 0.1714 | 0.2571 | 1.09 (0.96-1.23) | Additive | 0.2097 | 0.2587 | 1.08 (0.96-1.23) | |||
| B27 positive | 670 (32.81%) | 109 (10.68%) | 452 (44.27%) | 460 (45.05%) | 0.1773 | 0.266 | CC + CT vs TT | 0.1409 | 0.2114 | 1.13 (0.96-1.33) | CC + CT vs TT | 0.1636 | 0.1963 | 1.13 (0.95-1.33) |
| Normal | 881 (30.96%) | 142 (9.98%) | 597 (41.95%) | 684 (48.07%) | CC vs CT + TT | 0.5740 | 0.574 | 1.08 (0.83-1.4) | CC vs CT + TT | 0.6572 | 0.6572 | 1.06 (0.81-1.4) | ||
|
| ||||||||||||||
| RANKL rs7984870 CG | G |
|
|
| 0.3311 | 0.4512 | Additive | 0.3080 | 0.4113 | 1.16 (0.87-1.56) | Additive | 0.2904 | 0.3764 | 1.17 (0.87-1.58) |
| B27 positive | 1103 (54.28%) | 214 (21.06%) | 501 (49.31%) | 301 (29.63%) | GG + CG vs CC | 0.9722 | 0.98 | 1.01 (0.61-1.67) | GG + CG vs CC | 0.9153 | 0.9876 | 1.03 (0.62-1.7) | ||
| B27 negative | 100 (50.51%) | 21 (21.21%) | 56 (56.57%) | 22 (22.22%) | GG vs CG + CC | 0.1230 | 0.2007 | 1.47 (0.9-2.41) | GG vs CG + CC | 0.1253 | 0.2161 | 1.47 (0.9-2.41) | ||
| G |
|
|
| Additive | 0.0266 | 0.0637 | 1.14 (1.02-1.27) | Additive | 0.0386 | 0.1003 | 1.13 (1.01-1.28) | |||
| B27 positive | 1103 (54.28%) | 214 (21.06%) | 501 (49.31%) | 301 (29.63%) | 0.0269 | 0.0638 | GG + CG vs CC | 0.0760 | 0.2114 | 1.19 (0.98-1.44) | GG + CG vs CC | 0.0585 | 0.1715 | 1.22 (0.99-1.49) |
| Normal | 1456 (51.05%) | 344 (24.12%) | 708 (49.65%) | 374 (26.23%) | GG vs CG + CC | 0.0643 | 0.1286 | 1.18 (0.99-1.42) | GG vs CG + CC | 0.1321 | 0.2666 | 1.16 (0.96-1.39) | ||
|
| ||||||||||||||
| RANKL rs9525641 CT | T |
|
|
| 0.376 | 0.4512 | Additive | 0.3632 | 0.4113 | 1.15 (0.86-1.53) | Additive | 0.3764 | 0.3764 | 1.14 (0.85-1.53) |
| B27 positive | 1103 (54.39%) | 214 (21.1%) | 497 (49.01%) | 303 (29.88%) | TT + CT vs CC | 0.9800 | 0.98 | 1.01 (0.61-1.66) | TT + CT vs CC | 0.9591 | 0.9876 | 1.01 (0.61-1.68) | ||
| B27 negative | 101 (51.01%) | 21 (21.21%) | 55 (55.56%) | 23 (23.23%) | TT vs CT + CC | 0.1672 | 0.2007 | 1.41 (0.87-2.28) | TT vs CT + CC | 0.1867 | 0.224 | 1.39 (0.85-2.26) | ||
| T |
|
|
| Additive | 0.0208 | 0.0637 | 1.14 (1.02-1.28) | Additive | 0.0322 | 0.1003 | 1.14 (1.01-1.28) | |||
| B27 positive | 1103 (54.39%) | 214 (21.1%) | 497 (49.01%) | 303 (29.88%) | 0.0206 | 0.0638 | TT + CT vs CC | 0.0719 | 0.2114 | 1.19 (0.99-1.45) | TT + CT vs CC | 0.0529 | 0.1715 | 1.22 (1-1.49) |
| Normal | 1458 (51.01%) | 346 (24.21%) | 708 (49.55%) | 375 (26.24%) | TT vs CT + CC | 0.0479 | 0.1286 | 1.2 (1-1.43) | TT vs CT + CC | 0.1132 | 0.2666 | 1.16 (0.97-1.4) | ||
|
| ||||||||||||||
| RANKL rs9533155 GC | C |
|
|
| 0.3659 | 0.4512 | Additive | 0.3539 | 0.4113 | 1.15 (0.86-1.54) | Additive | 0.3372 | 0.3764 | 1.16 (0.86-1.55) |
| B27 positive | 1137 (55.95%) | 200 (19.69%) | 495 (48.72%) | 321 (31.59%) | CC + GC vs GG | 0.9069 | 0.98 | 0.97 (0.58-1.63) | CC + GC vs GG | 0.9876 | 0.9876 | 1 (0.59-1.68) | ||
| B27 negative | 104 (52.53%) | 19 (19.19%) | 56 (56.57%) | 24 (24.24%) | CC vs GC + GG | 0.1329 | 0.2007 | 1.44 (0.9-2.32) | CC vs GC + GG | 0.1441 | 0.2161 | 1.43 (0.89-2.31) | ||
| C |
|
|
| Additive | 0.0319 | 0.0637 | 1.13 (1.01-1.27) | Additive | 0.0502 | 0.1003 | 1.13 (1-1.27) | |||
| B27 positive | 1137 (55.95%) | 200 (19.69%) | 495 (48.72%) | 321 (31.59%) | 0.0319 | 0.0638 | CC + GC vs GG | 0.1215 | 0.2114 | 1.17 (0.96-1.43) | CC + GC vs GG | 0.0858 | 0.1715 | 1.2 (0.98-1.48) |
| Normal | 1508 (52.84%) | 318 (22.28%) | 710 (49.75%) | 399 (27.96%) | CC vs GC + GG | 0.0523 | 0.1286 | 1.19 (1-1.42) | CC vs GC + GG | 0.1333 | 0.2666 | 1.15 (0.96-1.38) | ||
|
| ||||||||||||||
| OPG rs3102735 CT | C |
|
|
| 0.4528 | 0.4528 | Additive | 0.4113 | 0.4113 | 1.2 (0.78-1.87) | Additive | 0.3280 | 0.3764 | 1.25 (0.8-1.95) |
| B27 positive | 303 (14.91%) | 19 (1.87%) | 265 (26.08%) | 732 (72.05%) | CC + CT vs TT | 0.3438 | 0.98 | 1.27 (0.78-2.05) | CC + CT vs TT | 0.2662 | 0.7985 | 1.32 (0.81-2.15) | ||
| B27 negative | 25 (12.76%) | 2 (2.04%) | 21 (21.43%) | 75 (76.53%) | CC vs CT + TT | 0.9055 | 0.9055 | 0.91 (0.21-3.96) | CC vs CT + TT | 0.9262 | 0.9262 | 0.93 (0.21-4.07) | ||
| C |
|
|
| Additive | 0.4052 | 0.4416 | 1.07 (0.91-1.26) | Additive | 0.2156 | 0.2587 | 1.11 (0.94-1.32) | |||
| B27 positive | 303 (14.91%) | 19 (1.87%) | 265 (26.08%) | 732 (72.05%) | 0.4048 | 0.446 | CC + CT vs TT | 0.2542 | 0.305 | 1.11 (0.93-1.33) | CC + CT vs TT | 0.1167 | 0.1751 | 1.17 (0.96-1.41) |
| Normal | 400 (14.06%) | 32 (2.25%) | 336 (23.63%) | 1054 (74.12%) | CC vs CT + TT | 0.5183 | 0.574 | 0.83 (0.47-1.46) | CC vs CT + TT | 0.5798 | 0.6572 | 0.84 (0.46-1.53) | ||
|
| ||||||||||||||
| OPG rs2073618 CG | C |
|
|
| 0.0645 | 0.387 | Additive | 0.0575 | 0.3448 | 1.36 (0.99-1.88) | Additive | 0.0333 | 0.1999 | 1.42 (1.03-1.96) |
| B27 positive | 1566 (77.07%) | 608 (59.84%) | 350 (34.45%) | 58 (5.71%) | CC + CG vs GG | 0.0803 | 0.482 | 1.88 (0.93-3.79) | CC + CG vs GG | 0.0481 | 0.2888 | 2.05 (1.01-4.18) | ||
| B27 negative | 139 (70.92%) | 51 (52.04%) | 37 (37.76%) | 10 (10.2%) | CC vs CG + GG | 0.1347 | 0.2007 | 1.37 (0.91-2.08) | CC vs CG + GG | 0.0956 | 0.2161 | 1.43 (0.94-2.17) | ||
| C |
|
|
| Additive | 0.4416 | 0.4416 | 1.05 (0.92-1.21) | Additive | 0.4730 | 0.473 | 1.05 (0.91-1.21) | |||
| B27 positive | 1566 (77.07%) | 608 (59.84%) | 350 (34.45%) | 58 (5.71%) | 0.446 | 0.446 | CC + CG vs GG | 0.6715 | 0.6715 | 0.93 (0.65-1.31) | CC + CG vs GG | 0.4772 | 0.4772 | 0.87 (0.6-1.26) |
| Normal | 2177 (76.12%) | 823 (57.55%) | 531 (37.13%) | 76 (5.31%) | CC vs CG + GG | 0.2574 | 0.386 | 1.1 (0.93-1.29) | CC vs CG + GG | 0.2314 | 0.3471 | 1.11 (0.94-1.32) | ||
∗ p trend: the p value from the Cochran-Armitage trend test with 100000 permutations.
Association of RANKL SNP haplotypes with AS susceptibility in Taiwanese.
| Haplotypes of rs7984870, rs9533155, and rs9525641 | Estimated frequency (%) | Permutation | Logistic regression | Logistic regression adjusted for sex | ||||
|---|---|---|---|---|---|---|---|---|
| AS ( | Normal ( | All ( |
|
| OR (95% CI) |
| OR (95% CI) | |
| G-C-T | 51.41% | 49.74% | 50.48% | 0.2412 | 0.2224 | 1.07 (0.96-1.2) | 0.2620 | 1.07 (0.95-1.2) |
| C-G-C | 41.83% | 45.88% | 44.10% | 0.0034 | 0.0042 | 0.85 (0.76-0.95) |
| 0.85 (0.76-0.96) |
| Others | 6.76% | 4.38% | 5.42% | 3.33 × 10−4 | 1.57 (1.23-2) | 9.06 × 10−4 | 1.54 (1.19-2) | |
∗The p value for the estimated haplotype was generated from 10000 permutations using the EM algorithm.
Figure 1RANKL promoter probes containing SNPs bind nuclear proteins with different affinities. A nuclear extract of hFOB cells was incubated with biotin-labeled probes in the presence or absence of a 100-fold excess of unlabeled probes, 2 μg anti-Sp1 antibody (S), or mouse IgG (m). After 30 min, the reaction mixture was analyzed by EMSA. (a) Nuclear proteins formed 3 complexes with the -693G probe, but none with the -693C probe. (b) Nuclear proteins and DNA probes formed more complexes with the −290T probe than with the -290C probe at the indicated region. Asterisks indicate protein-DNA complexes.
Figure 2Total serum levels of soluble receptor activator nuclear factor kappa B ligand (sRANKL) in patients with ankylosing spondylitis (AS). (a) Concentrations of serum sRANKL in homozygous carriers of the RANKL CGC haplotype (rs7984870, rs9533155, and rs9525641) compared to those in homozygous carriers of the RANKL GCT haplotype. (b) Concentrations of serum sRANKL in AS with syndesmophyte formation compared with those without syndesmophyte formation (p = 0.0054, by Mann-Whitney U test).