Literature DB >> 30974317

Genetic interaction networks in cancer cells.

Barbara Mair1, Jason Moffat2, Charles Boone2, Brenda J Andrews3.   

Abstract

The genotype-to-phenotype relationship in health and disease is complex and influenced by both an individual's environment and their unique genome. Personal genetic variants can modulate gene function to generate a phenotype either through a single gene effect or through genetic interactions involving two or more genes. The relevance of genetic interactions to disease phenotypes has been particularly clear in cancer research, where an extreme genetic interaction, synthetic lethality, has been exploited as a therapeutic strategy. The obvious benefits of unmasking genetic background-specific vulnerabilities, coupled with the power of systematic genome editing, have fueled efforts to translate genetic interaction mapping from model organisms to human cells. Here, we review recent developments in genetic interaction mapping, with a focus on CRISPR-based genome editing technologies and cancer.
Copyright © 2019 Elsevier Ltd. All rights reserved.

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Year:  2019        PMID: 30974317      PMCID: PMC6820710          DOI: 10.1016/j.gde.2019.03.002

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  61 in total

1.  Phosphoproteome Integration Reveals Patient-Specific Networks in Prostate Cancer.

Authors:  Justin M Drake; Evan O Paull; Nicholas A Graham; John K Lee; Bryan A Smith; Bjoern Titz; Tanya Stoyanova; Claire M Faltermeier; Vladislav Uzunangelov; Daniel E Carlin; Daniel Teo Fleming; Christopher K Wong; Yulia Newton; Sud Sudha; Ajay A Vashisht; Jiaoti Huang; James A Wohlschlegel; Thomas G Graeber; Owen N Witte; Joshua M Stuart
Journal:  Cell       Date:  2016-08-04       Impact factor: 41.582

Review 2.  Towards quantitative and multiplexed in vivo functional cancer genomics.

Authors:  Ian P Winters; Christopher W Murray; Monte M Winslow
Journal:  Nat Rev Genet       Date:  2018-12       Impact factor: 53.242

Review 3.  Emerging and evolving concepts in gene essentiality.

Authors:  Giulia Rancati; Jason Moffat; Athanasios Typas; Norman Pavelka
Journal:  Nat Rev Genet       Date:  2017-10-16       Impact factor: 53.242

4.  Genetic interaction mapping in mammalian cells using CRISPR interference.

Authors:  Dan Du; Assen Roguev; David E Gordon; Meng Chen; Si-Han Chen; Michael Shales; John Paul Shen; Trey Ideker; Prashant Mali; Lei S Qi; Nevan J Krogan
Journal:  Nat Methods       Date:  2017-05-08       Impact factor: 28.547

5.  Exploring genetic suppression interactions on a global scale.

Authors:  Jolanda van Leeuwen; Carles Pons; Joseph C Mellor; Takafumi N Yamaguchi; Helena Friesen; John Koschwanez; Mojca Mattiazzi Ušaj; Maria Pechlaner; Mehmet Takar; Matej Ušaj; Benjamin VanderSluis; Kerry Andrusiak; Pritpal Bansal; Anastasia Baryshnikova; Claire E Boone; Jessica Cao; Atina Cote; Marinella Gebbia; Gene Horecka; Ira Horecka; Elena Kuzmin; Nicole Legro; Wendy Liang; Natascha van Lieshout; Margaret McNee; Bryan-Joseph San Luis; Fatemeh Shaeri; Ermira Shuteriqi; Song Sun; Lu Yang; Ji-Young Youn; Michael Yuen; Michael Costanzo; Anne-Claude Gingras; Patrick Aloy; Chris Oostenbrink; Andrew Murray; Todd R Graham; Chad L Myers; Brenda J Andrews; Frederick P Roth; Charles Boone
Journal:  Science       Date:  2016-11-04       Impact factor: 47.728

6.  Systematic analysis of complex genetic interactions.

Authors:  Elena Kuzmin; Benjamin VanderSluis; Wen Wang; Guihong Tan; Raamesh Deshpande; Yiqun Chen; Matej Usaj; Attila Balint; Mojca Mattiazzi Usaj; Jolanda van Leeuwen; Elizabeth N Koch; Carles Pons; Andrius J Dagilis; Michael Pryszlak; Jason Zi Yang Wang; Julia Hanchard; Margot Riggi; Kaicong Xu; Hamed Heydari; Bryan-Joseph San Luis; Ermira Shuteriqi; Hongwei Zhu; Nydia Van Dyk; Sara Sharifpoor; Michael Costanzo; Robbie Loewith; Amy Caudy; Daniel Bolnick; Grant W Brown; Brenda J Andrews; Charles Boone; Chad L Myers
Journal:  Science       Date:  2018-04-20       Impact factor: 47.728

Review 7.  Integrating genetic approaches into the discovery of anticancer drugs.

Authors:  L H Hartwell; P Szankasi; C J Roberts; A W Murray; S H Friend
Journal:  Science       Date:  1997-11-07       Impact factor: 47.728

Review 8.  Synthetic lethality and cancer.

Authors:  Nigel J O'Neil; Melanie L Bailey; Philip Hieter
Journal:  Nat Rev Genet       Date:  2017-06-26       Impact factor: 53.242

9.  Inconsistency in large pharmacogenomic studies.

Authors:  Benjamin Haibe-Kains; Nehme El-Hachem; Nicolai Juul Birkbak; Andrew C Jin; Andrew H Beck; Hugo J W L Aerts; John Quackenbush
Journal:  Nature       Date:  2013-11-27       Impact factor: 49.962

Review 10.  Synthetic Lethality and Cancer - Penetrance as the Major Barrier.

Authors:  Colm J Ryan; Ilirjana Bajrami; Christopher J Lord
Journal:  Trends Cancer       Date:  2018-09-15
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  10 in total

1.  Homeostatic plasticity fails at the intersection of autism-gene mutations and a novel class of common genetic modifiers.

Authors:  Özgür Genç; Joon-Yong An; Richard D Fetter; Yelena Kulik; Giulia Zunino; Stephan J Sanders; Graeme W Davis
Journal:  Elife       Date:  2020-07-01       Impact factor: 8.140

2.  The Pathophysiology of Rett Syndrome With a Focus on Breathing Dysfunctions.

Authors:  Jan-Marino Ramirez; Marlusa Karlen-Amarante; Jia-Der Ju Wang; Nicholas E Bush; Michael S Carroll; Debra E Weese-Mayer; Alyssa Huff
Journal:  Physiology (Bethesda)       Date:  2020-11-01

Review 3.  Genetic interactions effects for cancer disease identification using computational models: a review.

Authors:  R Manavalan; S Priya
Journal:  Med Biol Eng Comput       Date:  2021-04-11       Impact factor: 2.602

Review 4.  CRISPR in cancer biology and therapy.

Authors:  Alyna Katti; Bianca J Diaz; Christina M Caragine; Neville E Sanjana; Lukas E Dow
Journal:  Nat Rev Cancer       Date:  2022-02-22       Impact factor: 60.716

5.  Disruption of the MSL complex inhibits tumour maintenance by exacerbating chromosomal instability.

Authors:  Josep Monserrat; Cristina Morales Torres; Louise Richardson; Thomas Stuart Wilson; Harshil Patel; Marie-Charlotte Domart; Stuart Horswell; Ok-Ryul Song; Ming Jiang; Margaret Crawford; Minh Bui; Yamini Dalal; Paola Scaffidi
Journal:  Nat Cell Biol       Date:  2021-04-09       Impact factor: 28.824

6.  Crippling life support for SARS-CoV-2 and other viruses through synthetic lethality.

Authors:  Fred D Mast; Arti T Navare; Almer M van der Sloot; Jasmin Coulombe-Huntington; Michael P Rout; Nitin S Baliga; Alexis Kaushansky; Brian T Chait; Alan Aderem; Charles M Rice; Andrej Sali; Mike Tyers; John D Aitchison
Journal:  J Cell Biol       Date:  2020-10-05       Impact factor: 8.077

7.  FEN1 endonuclease as a therapeutic target for human cancers with defects in homologous recombination.

Authors:  Elaine Guo; Yuki Ishii; James Mueller; Anjana Srivatsan; Timothy Gahman; Christopher D Putnam; Jean Y J Wang; Richard D Kolodner
Journal:  Proc Natl Acad Sci U S A       Date:  2020-07-27       Impact factor: 11.205

8.  Identifying key questions in the ecology and evolution of cancer.

Authors:  Antoine M Dujon; Athena Aktipis; Catherine Alix-Panabières; Sarah R Amend; Amy M Boddy; Joel S Brown; Jean-Pascal Capp; James DeGregori; Paul Ewald; Robert Gatenby; Marco Gerlinger; Mathieu Giraudeau; Rodrigo K Hamede; Elsa Hansen; Irina Kareva; Carlo C Maley; Andriy Marusyk; Nicholas McGranahan; Michael J Metzger; Aurora M Nedelcu; Robert Noble; Leonard Nunney; Kenneth J Pienta; Kornelia Polyak; Pascal Pujol; Andrew F Read; Benjamin Roche; Susanne Sebens; Eric Solary; Kateřina Staňková; Holly Swain Ewald; Frédéric Thomas; Beata Ujvari
Journal:  Evol Appl       Date:  2021-02-08       Impact factor: 5.183

9.  Paralogous synthetic lethality underlies genetic dependencies of the cancer-mutated gene STAG2.

Authors:  Melanie L Bailey; David Tieu; Andrea Habsid; Amy Hin Yan Tong; Katherine Chan; Jason Moffat; Philip Hieter
Journal:  Life Sci Alliance       Date:  2021-08-30

10.  Endogenous DNA 3' Blocks Are Vulnerabilities for BRCA1 and BRCA2 Deficiency and Are Reversed by the APE2 Nuclease.

Authors:  Alejandro Álvarez-Quilón; Jessica L Wojtaszek; Marie-Claude Mathieu; Tejas Patel; C Denise Appel; Nicole Hustedt; Silvia Emma Rossi; Bret D Wallace; Dheva Setiaputra; Salomé Adam; Yota Ohashi; Henrique Melo; Tiffany Cho; Christian Gervais; Ivan M Muñoz; Eric Grazzini; Jordan T F Young; John Rouse; Michael Zinda; R Scott Williams; Daniel Durocher
Journal:  Mol Cell       Date:  2020-06-08       Impact factor: 17.970

  10 in total

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