Literature DB >> 30292351

Synthetic Lethality and Cancer - Penetrance as the Major Barrier.

Colm J Ryan1, Ilirjana Bajrami2, Christopher J Lord3.   

Abstract

Synthetic lethality has long been proposed as an approach for targeting genetic defects in tumours. Despite a decade of screening efforts, relatively few robust synthetic lethal targets have been identified. Improved genetic perturbation techniques, including CRISPR/Cas9 gene editing, have resulted in renewed enthusiasm for searching for synthetic lethal effects in cancer. An implicit assumption behind this enthusiasm is that the lack of reproducibly identified targets can be attributed to limitations of RNAi technologies. We argue here that a bigger hurdle is that most synthetic lethal interactions (SLIs) are not highly penetrant, in other words they are not robust to the extensive molecular heterogeneity seen in tumours. We outline strategies for identifying and prioritising SLIs that are most likely to be highly penetrant.
Copyright © 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  genetic screening; heterogeneity; penetrance; robustness; synthetic lethality

Mesh:

Year:  2018        PMID: 30292351     DOI: 10.1016/j.trecan.2018.08.003

Source DB:  PubMed          Journal:  Trends Cancer        ISSN: 2405-8025


  20 in total

Review 1.  Genetic interaction networks in cancer cells.

Authors:  Barbara Mair; Jason Moffat; Charles Boone; Brenda J Andrews
Journal:  Curr Opin Genet Dev       Date:  2019-04-08       Impact factor: 5.578

2.  Synthetic lethal kinases in Ras/p53 mutant squamous cell carcinoma.

Authors:  Russell Moser; Kay E Gurley; Olga Nikolova; Guangrong Qin; Rashmi Joshi; Eduardo Mendez; Ilya Shmulevich; Amanda Ashley; Carla Grandori; Christopher J Kemp
Journal:  Oncogene       Date:  2022-05-10       Impact factor: 8.756

Review 3.  Synthetic Vulnerabilities in the KRAS Pathway.

Authors:  Marta Roman; Elizabeth Hwang; E Alejandro Sweet-Cordero
Journal:  Cancers (Basel)       Date:  2022-06-08       Impact factor: 6.575

4.  Integrative analysis of large-scale loss-of-function screens identifies robust cancer-associated genetic interactions.

Authors:  Christopher J Lord; Niall Quinn; Colm J Ryan
Journal:  Elife       Date:  2020-05-28       Impact factor: 8.140

5.  Quantification of microenvironmental metabolites in murine cancers reveals determinants of tumor nutrient availability.

Authors:  Mark R Sullivan; Laura V Danai; Caroline A Lewis; Sze Ham Chan; Dan Y Gui; Tenzin Kunchok; Emily A Dennstedt; Matthew G Vander Heiden; Alexander Muir
Journal:  Elife       Date:  2019-04-16       Impact factor: 8.140

6.  Synthetic lethality between VPS4A and VPS4B triggers an inflammatory response in colorectal cancer.

Authors:  Ewelina Szymańska; Paulina Nowak; Krzysztof Kolmus; Magdalena Cybulska; Krzysztof Goryca; Edyta Derezińska-Wołek; Anna Szumera-Ciećkiewicz; Marta Brewińska-Olchowik; Aleksandra Grochowska; Katarzyna Piwocka; Monika Prochorec-Sobieszek; Michał Mikula; Marta Miączyńska
Journal:  EMBO Mol Med       Date:  2020-01-13       Impact factor: 12.137

Review 7.  Harnessing DNA Double-Strand Break Repair for Cancer Treatment.

Authors:  Anika Trenner; Alessandro A Sartori
Journal:  Front Oncol       Date:  2019-12-10       Impact factor: 6.244

8.  Polθ inhibitors elicit BRCA-gene synthetic lethality and target PARP inhibitor resistance.

Authors:  Diana Zatreanu; Helen M R Robinson; Omar Alkhatib; Marie Boursier; Harry Finch; Lerin Geo; Diego Grande; Vera Grinkevich; Robert A Heald; Sophie Langdon; Jayesh Majithiya; Claire McWhirter; Niall M B Martin; Shaun Moore; Joana Neves; Eeson Rajendra; Marco Ranzani; Theresia Schaedler; Martin Stockley; Kimberley Wiggins; Rachel Brough; Sandhya Sridhar; Aditi Gulati; Nan Shao; Luned M Badder; Daniela Novo; Eleanor G Knight; Rebecca Marlow; Syed Haider; Elsa Callen; Graeme Hewitt; Joost Schimmel; Remko Prevo; Christina Alli; Amanda Ferdinand; Cameron Bell; Peter Blencowe; Chris Bot; Mathew Calder; Mark Charles; Jayne Curry; Tennyson Ekwuru; Katherine Ewings; Wojciech Krajewski; Ellen MacDonald; Hollie McCarron; Leon Pang; Chris Pedder; Laurent Rigoreau; Martin Swarbrick; Ed Wheatley; Simon Willis; Ai Ching Wong; Andre Nussenzweig; Marcel Tijsterman; Andrew Tutt; Simon J Boulton; Geoff S Higgins; Stephen J Pettitt; Graeme C M Smith; Christopher J Lord
Journal:  Nat Commun       Date:  2021-06-17       Impact factor: 17.694

9.  Inhibition of miR-1193 leads to synthetic lethality in glioblastoma multiforme cells deficient of DNA-PKcs.

Authors:  Jing Zhang; Li Jing; Subee Tan; Er-Ming Zeng; Yingbo Lin; Lingfeng He; Zhigang Hu; Jianping Liu; Zhigang Guo
Journal:  Cell Death Dis       Date:  2020-07-30       Impact factor: 8.469

10.  Integration of multiple biological contexts reveals principles of synthetic lethality that affect reproducibility.

Authors:  Angel A Ku; Hsien-Ming Hu; Xin Zhao; Khyati N Shah; Sameera Kongara; Di Wu; Frank McCormick; Allan Balmain; Sourav Bandyopadhyay
Journal:  Nat Commun       Date:  2020-05-12       Impact factor: 14.919

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