| Literature DB >> 30956687 |
Yupeng Li1, Jiehui Jiang2, Jiaying Lu3, Juanjuan Jiang1, Huiwei Zhang3, Chuantao Zuo3.
Abstract
BACKGROUND: Alzheimer's disease (AD) is the most common form of progressive and irreversible dementia, and accurate diagnosis of AD at its prodromal stage is clinically important. Currently, computer-aided diagnosis of AD and mild cognitive impairment (MCI) using 18F-fluorodeoxy-glucose positron emission tomography (18F-FDG PET) imaging is usually based on low-level imaging features or deep learning methods, which have difficulties in achieving sufficient classification accuracy or lack clinical significance. This research therefore aimed to implement a new feature extraction method known as radiomics, to improve the classification accuracy and discover high-order features that can reveal pathological information.Entities:
Keywords: 18F-FDG PET; Alzheimer’s disease; mild cognitive impairment; radiomics
Year: 2019 PMID: 30956687 PMCID: PMC6444412 DOI: 10.1177/1756286419838682
Source DB: PubMed Journal: Ther Adv Neurol Disord ISSN: 1756-2856 Impact factor: 6.570
Figure 1.Workflow of the analysis methods in this study, which comprised five steps: image preprocessing, image preprocessing, identification and extraction of regions of interest, feature extraction, feature selection, and SVM classification.
SVM, support vector machine.
Basic information of all the data.
| Group | Sex (M/F) | Age (years) | ADAS | CDRSB | |
|---|---|---|---|---|---|
| ADNI cohorts | AD1 | 70/60 | 71.3 ± 6.1 | 30.2 ± 7.1 | 4.5 ± 1.6 |
| MCI | 66/64 | 70.7 ± 5.4 | 17.3 ± 6.4 | 1.7 ± 0.8 | |
| HC1 | 13/19 | 76.2 ± 6.8 | Twice 18F-FDG PET imaging | ||
| HC2 | 68/62 | 71.8 ± 5.9 | 8.8 ± 3.6 | 0 | |
| Huashan cohorts | AD2 | 16/6 | 57.3 ± 6.5 | N/A | N/A |
| HC3 | 16/6 | 57.3 ± 6.5 | N/A | N/A | |
18F-FDG PET, 18F-fluorodeoxy-glucose positron emission tomography; AD, Alzheimer’s disease; ADAS, Alzheimer’s disease assessment scale; ADNI, Alzheimer’s Disease Neuroimaging Initiative; CDRSB, clinical dementia rating scale in its sum of boxes; F, female; HC, healthy control; M, male; MNI, Montreal Neurological Institute; N/A, not available.
Details of radiomic texture features.
| Texture matrices | References | Feature name | Formula |
|---|---|---|---|
| Global | Variance |
| |
| Skewness |
| ||
| Kurtosis |
| ||
| Gray-level co-occurrence matrix (GLCM) | Haralick and colleagues[ | Energy |
|
| Contrast |
| ||
| Correlation |
| ||
| Homogeneity |
| ||
| Variance |
| ||
| Sum average |
| ||
| Entropy |
| ||
| Auto correlation | refer to the references | ||
| Dissimilarity | |||
| Gray-level run-length matrix (GLRLM) | Galloway[ | Short-run emphasis (SRE) |
|
| Long-run emphasis (LRE) |
| ||
| Gray-level nonuniformity (GLN) |
| ||
| Run-length nonuniformity (RLN) |
| ||
| Run percentage (RP) |
| ||
| Chu and colleagues[ | Low-gray-level run emphasis (LGRE) |
| |
| High-gray-level run emphasis (HGRE) |
| ||
| Dasarathy and Holder[ | Short-run low-gray-level emphasis (SRLGE) |
| |
| Short-run high gray-level emphasis (SRHGE) |
| ||
| Long-run low-gray-level emphasis (LRLGE) |
| ||
| Long-run high-gray-level emphasis (LRHGE) |
| ||
| Thibault and colleagues[ | Gray-level variance (GLV) |
| |
| Run-length variance (RLV) |
| ||
| Gray-level size zone matrix (GLSZM) | Galloway[ | Small zone emphasis (SZE) |
|
| Large zone emphasis (LZE) |
| ||
| Gray-level nonuniformity (GLN) |
| ||
| Zone-size nonuniformity (ZSN) |
| ||
| Zone percentage (ZP) |
| ||
| Chu and colleagues[ | Low-gray-level zone emphasis (LGZE) |
| |
| High-gray-level zone emphasis (HGZE) |
| ||
| Dasarathy and Holder[ | Small zone low-gray-level emphasis (SZLGE) |
| |
| Small zone high-gray-level emphasis (SZHGE) |
| ||
| Large zone low-gray-level emphasis (LZLGE) |
| ||
| Large zone high-gray-level emphasis (LZHGE) |
| ||
| Thibault and colleagues[ | Gray-level variance (GLV) |
| |
| Zone-size variance (ZSV) |
| ||
| Neighborhood gray-tone difference matrix (NGTDM) | Amadasun and King[ | Coarseness |
|
| Contrast |
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| Busyness |
| ||
| Complexity |
| ||
| Strength |
|
Haralick RM, Shanmugam K and Dinstein IH. Textural features for image classification. IEEE Trans Syst Man Cybern 1973; 3: 610–621.
Galloway MM. Texture analysis using grey level run lengths. Vol. 75. NASA STI/Recon Technical Report N. Linthicum Heights, MD, 1974.
Chu A, Sehgal CM and Greenleaf JF. Use of gray value distribution of run lengths for texture analysis. Patt Recog Lett 1990; 11: 415–419.
Dasarathy BV and Holder EB. Image characterizations based on joint gray level—run length distributions. Patt Recog Lett 1991; 12: 497–502.
Thibault G, Fertil B, Navarro C, et al. Texture indexes and gray level size zone matrix application to cell nuclei classification. In: 10th International conference on pattern recognition and information processing, Minsk, Belarus, 2009, pp.140–145.
Amadasun M and King R. Textural features corresponding to textural properties. IEEE Trans Syst Man Cybern 1989; 19: 1264–1274.
Figure 2.Results of the two-sample Student’s t test brain 18F-FDG PET images conducted to assess differences between AD patients and HCs.
18F-FDG PET, 18F-fluorodeoxy-glucose positron emission tomography; AD, Alzheimer’s disease; ADNI, Alzheimer’s Disease Neuroimaging Initiative; HC, healthy control.
Brain regions with significant differences between AD patients and HCs based on ADNI cohorts.
| MNI coordinate | Cluster location (standardized automated anatomical labeling template) | Brodmann area | Hemisphere | Cluster size | Z-score | ||
|---|---|---|---|---|---|---|---|
| 14 | −68 | 74 | Temporal_Mid; Angular; Temporal_Sup; Calcarine; Occipital_Inf; Occipital_Sup; Parietal_Sup; Lingual; Occipital_Mid; Temporal_Inf; Precuneus; Cingulum_Mid; Cingulum_Post; Fusiform; Cuneus | 18,39,19,40,21,22,17,7,31,37,23,42,30 | Right/left | 13535 | −3.84 |
| −64 | 14 | 2 | Temporal_Mid; Temporal_Sup; Angular; Occipital_Mid | 22,39,19,21,42,41,40 | Left | 643 | −3.28 |
| 8 | −14 | 14 | Thalamus | – | Right | 99 | −2.96 |
| −12 | 2 | 16 | Caudate | – | Left | 68 | −2.93 |
| 18 | −4 | 20 | Caudate | – | Right | 22 | −2.79 |
| 54 | 22 | 38 | Frontal_Inf_Oper; Frontal_Mid; Frontal_Inf_Tri | 9 | Right | 37 | −2.8 |
| −52 | 15 | 34 | Precentral; Frontal_Inf_Oper; Frontal_Mid; Frontal_Inf_Tri | 9 | Left | 31 | −2.85 |
| 48 | 0 | 34 | Precentral | 6,9 | Right | 32 | −2.87 |
| −38 | −72 | 54 | Parietal_Inf; Angular; Parietal_Sup | 7,40,19 | Left | 518 | −3.25 |
| 16 | 52 | 44 | Frontal_Sup; Frontal_Sup_Medial | 8,9 | Right | 41 | −2.92 |
| 52 | 8 | 48 | Precentral; Frontal_Mid | 6 | Right | 34 | −2.79 |
AD, Alzheimer’s disease; ADNI, Alzheimer’s Disease Neuroimaging Initiative; HC, healthy control; MNI, Montreal Neurological Institute.
Brain regions with significant differences between AD and HC based on Huashan cohorts.
| MNI coordinates | Cluster location (standardized automated anatomical labeling template) | Brodmann area | Hemisphere | Cluster size | Z-score | ||
|---|---|---|---|---|---|---|---|
| 20 | −100 | −8 | Temporal_Mid; Temporal_Inf; Temporal_Sup; Angular; Occipital_Mid; Occipital_Sup; Occipital_Inf; Calcarine; Lingual; Parietal_Inf; Parietal_Sup; Cuneus; SupraMarginal; Fusiform | 7, 13, 18, 17, 19, 21, 22, 23, 30, 37, 39, 40 | Right/left | 5902 | −5.22 |
| 70 | −22 | 4 | Temporal_Sup; Temporal_Mid | 21, 22, 42 | Right | 317 | −4.52 |
| 14 | −72 | 28 | Cuneus; Precuneus; Cingulum_Post; Cingulum_Mid | 7, 23, 31 | Right | 180 | −4.17 |
| −38 | 72 | 54 | Parietal_Sup; Angular; Parietal_Inf | 7 | Left | 155 | −4.49 |
| −48 | 50 | 62 | Parietal_Inf | – | Left | 33 | −4.17 |
| 14 | −66 | 76 | Parietal_Sup; Precuneus; Postcentral | – | 353 | −5.07 | |
AD, Alzheimer’s disease; ADNI, Alzheimer’s Disease Neuroimaging Initiative; HC, healthy control; MNI, Montreal Neurological Institute.
Figure 3.Scatter plot of all radiomic features in relation to Cronbach’s alpha coefficient.
Stable features.
| R = 1/2 | R = 2/3 | R = 1 | R = 3/2 | R = 2 |
|---|---|---|---|---|
| Skewness | Skewness | Skewness | Skewness | Skewness |
| Energy | Energy | Kurtosis | Energy | Contrast |
| Contrast | Contrast | Energy | Contrast | Entropy |
| Entropy | Entropy | Contrast | Entropy | Homogeneity |
| Homogeneity | Correlation | Entropy | Homogeneity | SumAverage |
| Correlation | SumAverage | Homogeneity | Correlation | Variance |
| SumAverage | Variance | Correlation | SumAverage | Dissimilarity |
| Variance | Dissimilarity | SumAverage | Variance | SRE |
| Dissimilarity | AutoCorrelation | Variance | Dissimilarity | GLN |
| AutoCorrelation | SRE | Dissimilarity | AutoCorrelation | RLN |
| SRE | LRE | AutoCorrelation | SRE | RP |
| LRE | GLN | SRE | GLN | LGRE |
| GLN | RLN | LRE | RLN | HGRE |
| RLN | RP | GLN | RP | SRLGE |
| RP | LGRE | RLN | HGRE | LRLGE |
| LGRE | HGRE | RP | LRLGE | LRHGE |
| HGRE | SRHGE | LGRE | LRHGE | GLV |
| SRLGE | LRLGE | HGRE | GLV | RLV |
| SRHGE | LRHGE | SRLGE | RLV | LZE |
| LRLGE | GLV | SRHGE | SZE | GLN |
| LRHGE | RLV | LRLGE | LZE | ZP |
| GLV | LZE | LRHGE | GLN | LGZE |
| RLV | GLN | GLV | ZP | HGZE |
| SZE | ZSN | RLV | LGZE | SZLGE |
| LZE | ZP | SZE | HGZE | SZHGE |
| GLN | LGZE | LZE | SZLGE | LZLGE |
| ZSN | HGZE | GLN | SZHGE | LZHGE |
| ZP | SZLGE | ZSN | LZHGE | GLV |
| LGZE | SZHGE | ZP | GLV | ZSV |
| HGZE | LZLGE | LGZE | ZSV | Coarseness |
| SZLGE | GLV | HGZE | Coarseness | |
| SZHGE | ZSV | SZLGE | ||
| LZLGE | Coarseness | SZHGE | ||
| LZHGE | LZLGE | |||
| ZSV | LZHGE | |||
| Coarseness | GLV | |||
| ZSV | ||||
| Coarseness |
AD, Alzheimer’s disease; ADNI, Alzheimer’s Disease Neuroimaging Initiative; GLN, gray-level nonuniformity; GLV, gray-level variance; HGRE, high-gray-level run emphasis; HGZE, high-gray-level zone emphasis; ICC, intraclass correlation coefficient; LGRE, low-gray-level run emphasis; LGZE, low-gray-level zone emphasis; LRE, long-run emphasis; LRHGE, long-run high-gray-level emphasis; LRLGE, long-run low-gray-level emphasis; LZE, large zone emphasis; LZHGE, large zone high-gray-level emphasis; LZLGE, large zone low-gray-level emphasis; MCI, mild cognitive impairment; RLN, run-length nonuniformity; RLV, run-length variance; RP, run percentage; SRE, short-run emphasis; SRHGE, short-run high gray-level emphasis; SRLGE, short-run low-gray-level emphasis; SZHGE, small zone high-gray-level emphasis; SZLGE, small zone low-gray-level emphasis; ZP, zone percentage; ZSN, zone-size nonuniformity; ZSV, zone-size variance.
The key relative features selected by cross-validation, 500 times.
| AD | MCI | AD + MCI | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Feature | R | times | ICC[ | Feature | R | times | ICC[ | Feature | R | times | ICC[ |
| Energy | 1 | 488 | 0.956 | Entropy | 1 | 475 | 0.949 | Skewness | 1 | 412 | 0.901 |
| GLV | 1/3 | 479 | 0.947 | Homogeneity | 1 | 471 | 0.941 | Coarseness | 1 | 387 | 0.875 |
| Contrast | 1 | 465 | 0.931 | SRE | 1/2 | 447 | 0.927 | Correlation | 3/2 | 331 | 0.821 |
| Variance | 2/3 | 461 | 0.933 | RP | 2/3 | 413 | 0.894 | SZLGE | 2/3 | 317 | 0.806 |
| Entropy | 1 | 443 | 0.915 | Energy | 1 | 397 | 0.881 | Skewness | 1/2 | 311 | 0.803 |
| ZSV | 3/2 | 410 | 0.899 | GLV | 2/3 | 374 | 0.836 | – | |||
| HGRE | 1/2 | 393 | 0.878 | RLN | 1/2 | 363 | 0.829 | ||||
| SZHGE | 1 | 389 | 0.842 | LZE | 1 | 330 | 0.815 | ||||
| LRHGE | 2/3 | 354 | 0.827 | Dissimilarity | 1 | 314 | 0.803 | ||||
| RLV | 1 | 316 | 0.807 | ZP | 1/2 | 276 | 0.797 | ||||
ICC > 0.9 means excellent consistency and ICC > 0.8 means statistically acceptable consistency.
AD, Alzheimer’s disease; ADNI, Alzheimer’s Disease Neuroimaging Initiative; GLV, gray-level variance; HGRE, high-gray-level run emphasis; ICC, intraclass correlation coefficient; LRHGE, long-run high-gray-level emphasis; LZE, large zone emphasis; MCI, mild cognitive impairment; RLN, run-length nonuniformity; RLV, run-length variance; RP, run percentage; SRE, short-run emphasis; SZHGE, small zone high-gray-level emphasis; SZLGE, small zone low-gray-level emphasis; ZP, zone percentage; ZSV, zone-size variance.
Results for ADNI cohorts using the Huashan cohort ROIs.
(a) The top relative features selected by cross-validation 500 times.
| AD | MCI | AD + MCI | ||||||
|---|---|---|---|---|---|---|---|---|
| Feature | R | times | Feature | R | times | Feature | R | times |
| GLV | 1/2 | 471 | Entropy | 1 | 452 | Skewness | 1 | 383 |
| Energy | 1 | 463 | SRE | 1/2 | 449 | Coarseness | 1 | 361 |
| Contrast | 1 | 455 | Homogeneity | 1 | 431 | Correlation | 3/2 | 355 |
| Entropy | 1 | 449 | RP | 2/3 | 423 | Skewness | 1/2 | 328 |
| Variance | 2/3 | 447 | Energy | 1 | 396 | SZLGE | 2/3 | 291 |
| HGRE | 1/2 | 417 | RLN | 1/2 | 388 | – | ||
| ZSV | 3/2 | 405 | GLV | 2/3 | 359 | |||
| SZHGE | 1 | 383 | LZE | 1 | 341 | |||
| LRHGE | 2/3 | 345 | Dissimilarity | 1 | 317 | |||
| RLV | 1 | 324 | ZP | 1/2 | 280 | |||
Classification accuracy, AUC, sensitivity, and specificity.
| Group | Accuracy / AUC / sensitivity / specificity (average) | ||||
|---|---|---|---|---|---|
| Linear | Polynomial | RBF | Sigmoid | ||
| ADNI cohorts | AD |
| 88.1% ± 2.3% | 86.1% ± 2.4% | 86.3% ± 2.5% |
| 0.92 ± 0.01 | 0.88 ± 0.03 | 0.87 ± 0.03 | 0.88 ± 0.03 | ||
| 92.9% ± 2.4 % | 89.5% ± 2.6% | 85.3% ± 2.5% | 87.1% ± 2.6% | ||
| 90.2% ± 2.1 % | 87.1% ± 2.5% | 87.5% ± 2.7% | 83.2% ± 2.4% | ||
| AD |
| 83.4% ± 2.8% | 85.0% ± 2.5% | 83.5% ± 2.7% | |
| 0.85 ± 0.02 | 0.84 ± 0.04 | 0.86 ± 0.03 | 0.82 ± 0.03 | ||
| 87.3% ± 2.2% | 86.5% ± 2.9% | 86.7% ± 2.3% | 80.4% ± 2.9% | ||
| 86.2% ± 2.3% | 80.1% ± 2.8% | 83.3% ± 2.7% | 86.5% ± 2.8% | ||
| MCI |
| 81.8% ± 2.9% | 82.9% ± 2.8% | 81.5% ± 3.1% | |
| 0.80 ± 0.04 | 0.79 ± 0.04 | 0.81 ± 0.03 | 0.78 ± 0.05 | ||
| 83.8% ± 2.9% | 83.4% ± 3.1% | 83.1% ± 2.9% | 84.5% ± 2.9% | ||
| 82.9% ± 2.6% | 80.2% ± 2.9% | 82.7% ± 2.8% | 77.3% ± 3.2% | ||
| Huashan cohorts | AD |
| 88.4% ± 2.5% | 85.9% ± 2.6% | 87.1% ± 2.5% |
| 0.93 ± 0.02 | 0.89 ± 0.03 | 0.85 ± 0.03 | 0.89 ± 0.03 | ||
| 90.7% ± 2.4% | 89.4% ± 2.8% | 85.1% ± 2.8% | 88.2% ± 2.7% | ||
| 90.5% ± 2.6% | 87.8% ± 2.7% | 87.7% ± 2.4% | 82.4% ± 2.9% | ||
AD, Alzheimer’s disease; ADNI, Alzheimer’s Disease Neuroimaging Initiative; AUC, Area Under Curve; HC, healthy control; MCI, mild cognitive impairment; RBF, Radial Basis Function.
Classification accuracy of existing literature.
| References | Accuracy | |
|---|---|---|
| AD | MCI | |
| Silveira and Marques[ | 90.9% | 79.6% |
| Gray and colleagues[ | 81.6% | 70.2% |
| Liu, Manhua and colleagues[ | 91.2% | 78.9% |
| Our method |
|
|
AD, Alzheimer’s disease; HC, healthy control; MCI, mild cognitive impairment.
(b) Classification accuracy, AUC, sensitivity, and specificity.
| Group | Accuracy / AUC / sensitivity / specificity (average) | ||||
|---|---|---|---|---|---|
| Linear | Polynomial | RBF | Sigmoid | ||
| ADNI cohorts | AD |
| 87.8% ± 2.4% | 85.3% ± 2.7% | 85.8% ± 2.5% |
| 0.91 ± 0.02 | 0.86 ± 0.03 | 0.85 ± 0.03 | 0.85 ± 0.03 | ||
| 92.5% ± 1.9% | 89.1% ± 2.3% | 84.8% ± 2.9% | 86.5% ± 2.5% | ||
| 90.1% ± 2.2% | 86.9% ± 2.6% | 87.1% ± 2.5% | 83.1% ± 2.9% | ||
| AD |
| 83.1% ± 2.8% | 84.4% ± 2.7% | 83.3% ± 2.7% | |
| 0.84 ± 0.03 | 0.83 ± 0.03 | 0.84 ± 0.03 | 0.82 ± 0.04 | ||
| 86.6% ± 2.5% | 86.2% ± 2.7% | 86.2% ± 2.6% | 80.1% ± 2.9% | ||
| 85.9% ± 2.5% | 79.9% ± 3.0% | 82.7% ± 2.9% | 86.2% ± 2.5% | ||
| MCI |
| 80.8 % ± 3.1% | 81.9% ± 2.9% | 80.4% ± 3.0% | |
| 0.79 ± 0.04 | 0.76 ± 0.04 | 0.78 ± 0.04 | 0.76 ± 0.05 | ||
| 83.1% ± 2.8% | 82.7% ± 3.0% | 81.1% ± 3.0% | 82.3% ± 2.9% | ||
| 82.3% ± 2.9% | 79.8% ± 3.2% | 82.3% ± 2.7% | 76.5% ± 3.2% | ||
| Huashan cohorts | AD |
| 89.1% ± 2.1% | 86.4% ± 2.4% | 87.3% ± 2.5% |
| 0.93 ± 0.02 | 0.90 ± 0.02 | 0.86 ± 0.03 | 0.89 ± 0.03 | ||
| 90.9% ± 2.1% | 89.8% ± 2.2% | 85.6% ± 2.7% | 88.7% ± 2.6% | ||
| 91.1% ± 2.2% | 88.2% ± 2.2% | 88.1% ± 2.5% | 82.5% ± 2.9% | ||
AD, Alzheimer’s disease; ADNI, Alzheimer’s Disease Neuroimaging Initiative; AUC, Area Under Curve; GLV, gray-level variance; HGRE, high-gray-level run emphasis; LRHGE, long-run high-gray-level emphasis; LZE, large zone emphasis; LZHGE, large zone high-gray-level emphasis; MCI, mild cognitive impairment; RBF, Radial Basis Function; RLN, run-length nonuniformity; RLV, run-length variance; RP, run percentage; SRE, short-run emphasis; SZHGE, small zone high-gray-level emphasis; SZLGE, small zone low-gray-level emphasis; ZP, zone percentage; ZSV, zone-size variance.