| Literature DB >> 32322236 |
Panshi Liu1, Han Wang2, Shilei Zheng1, Fan Zhang3, Xianglin Zhang1.
Abstract
Background: Parkinson's disease (PD) is a neurodegenerative disease in which the neostriatum, including the caudate nucleus (CN) and putamen (PU), has an important role in the pathophysiology. However, conventional magnetic resonance imaging (MRI) lacks sufficient specificity to diagnose PD. Therefore, the study's aim was to investigate the feasibility of using a radiomics approach to distinguish PD patients from healthy controls on T2-weighted images of the neostriatum and provide a basis for the clinical diagnosis of PD.Entities:
Keywords: Parkinson's disease; T2-weighted imaging; diagnosis; neostriatum; radiomics
Year: 2020 PMID: 32322236 PMCID: PMC7156586 DOI: 10.3389/fneur.2020.00248
Source DB: PubMed Journal: Front Neurol ISSN: 1664-2295 Impact factor: 4.003
Figure 1Workflow of this study. (A) All T2-weighted imaging (T2WI) images were acquired on the same MRI scanner. (B) Regions of interest (ROIs) were manually placed on the bilateral caudate nucleus (CN) and putamen (PU). (C) A total of 274 radiomics features were extracted from each ROI. (D) On the R software platform with the glmnet package installed, least absolute shrinkage and selection operator (LASSO) regression was used to optimal features selection and radiomics signature building. (E) Receiver operating characteristic (ROC) curves were used to evaluate classification performance, and t-test analysis and box plots were used to compare the co-occurring optimal feature values.
Comparison of demographic and clinical characteristics between patients with PD and healthy controls in the training and test groups.
| Age (years, mean ± SD) | 70.48 ± 5.43 | 72.91 ± 9.89 | 0.124 | 69.19 ± 5.94 | 71.38 ± 9.54 | 0.377 | 0.381 | 0.544 |
| Gender (male/female) | 25/23 | 27/21 | 0.838 | 10/11 | 13/8 | 0.535 | 0.937 | 0.863 |
| Duration of disease | 4.75 ± 2.92 | 3.71 ± 2.19 | 0.111 | |||||
| Modified H&Y stage(median, IQRor mean ± SD) | 2.5 (2.0, 3.0) | 2.52 ± 0.97 | 0.711 | |||||
HC, healthy controls; HC-Training, healthy controls in the training group; HC-Test, healthy controls in the test group; PD, patients with Parkinson's disease; PD-Training, Parkinson's disease patients in the training group; PD-Test, Parkinson's disease patients in the test group; SD, standard deviation; Modified H&Y stage, modified Hoehn–Yahr stage; IQR, interquartile range.
The mean disease duration of PD patients, defined as the time between when a patient subjectively noticed his or her first symptoms and the moment of assessment.
Two-sample Student's t-test;
Chi-square test;
Mann–Whitney U-test.
Figure 2Dimensionality reduction with LASSO regression. (A,C) The coefficients of texture features, represented by each colored line, were plotted vs. log (lambda) in the caudate nucleus (CN) and putamen (PU) radiomics signatures, respectively. (B,D) The binomial deviances were plotted vs. log (lambda) in the CN and PU radiomics signatures, respectively. Using 10-fold cross-validation, the red points indicate average values of deviance for each lambda, and the left and right dotted vertical lines correspond to lambda in the minimum criteria and the one standard error of the minimum criteria, respectively.
Optimal features after the dimensionality reduction.
| −15.160413946 | ||
| Histogram | Perc.50%_R | −0.027683304 |
| Run-length matrix | Vertl_GlevNonU_R | 0.112951984 |
| Vertl_GlevNonU_L | 0.019889353 | |
| 45dgr_RLNonUni_L | 0.001556838 | |
| 135dr_RLNonUni_R | 0.005421572 | |
| Co-occurrence matrix | S (1,0)Correlat_L | 8.118174099 |
| S (1,0)Correlat_R | 9.221141623 | |
| S (0,1)SumVarnc_R | 0.001540649 | |
| S (1,1)Contrast_R | −2.039856941 | |
| S (1,−1)Contrast_L | −0.142200691 | |
| S (4,−4)InvDfMom_L | 0.750813907 | |
| S (5,5)InvDfMom_R | 0.462795637 | |
| 2.705271e+00 | ||
| Histogram | Kurtosis_L | 4.774812e−01 |
| Perc.01%_R | −3.950184e−02 | |
| Run-length matrix | Vertl_GlevNonU_R | 1.979927e−02 |
| 45dgr_RLNonUni_L | 4.756729e−06 | |
| Co-occurrence matrix | S (2,-2)Contrast_L | −1.047061e−02 |
| S (5,0)InvDfMom_L | −4.534430e+00 | |
| S (0,5)Contrast_R | −5.781975e−03 |
CN, caudate nucleus; PU, putamen.
Appeared simultaneously in two neostriatum radiomics signatures.
Figure 3Box plots of optimal feature that appeared simultaneously in two radiomics signatures.
Figure 4(A) Receiver operating characteristic (ROC) curves of the caudate nucleus (CN) radiomics signature for distinguishing between Parkinson's disease (PD) patients and healthy controls in the training (red) and test (blue) groups. (B) ROC curves of the putamen (PU) radiomics signature for distinguishing between PD patients and healthy controls in the training (red) and test (blue) groups.