Literature DB >> 30926921

Obscure soil microbes and where to find them.

Manuel Delgado-Baquerizo1.   

Abstract

Many soil bacteria and fungi remain unclassified at the highest taxonomic ranks (e.g. phyla level), which hampers our ability to assess the ecology and functional capabilities of these soil organisms in terrestrial ecosystems globally. The first logical step toward the classification of these unknown soil taxa is to identify potential locations on Earth where these unclassified bacteria and fungi are feasibly most prevalent. To do this, here I used data from a global soil survey across 235 locations, including amplicon sequencing information for fungal and bacterial communities, and generated global atlases highlighting those soils where the percentages of taxa of bacteria and fungi with an unknown phyla are expected to be more prevalent. Results indicate that soil samples with the largest percentage of fungal taxa with an unknown phyla can be found in dry forests and grasslands, while those with the largest percentage of bacterial taxa with an unknown phyla are found in boreal and tropical forests. This information can be used by taxonomists and microbiologists to target these potentially new soil taxa.

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Year:  2019        PMID: 30926921      PMCID: PMC6776042          DOI: 10.1038/s41396-019-0405-0

Source DB:  PubMed          Journal:  ISME J        ISSN: 1751-7362            Impact factor:   10.302


  1 in total

1.  Next-generation bacterial taxonomy.

Authors:  Ashley York
Journal:  Nat Rev Microbiol       Date:  2018-10       Impact factor: 60.633

  1 in total
  8 in total

1.  Fungal diversity and occurrence of mycotoxin producing fungi in tropical vineyards.

Authors:  Lorena Dutra-Silva; Giuliano E Pereira; Luís Roberto Batista; Filipe P Matteoli
Journal:  World J Microbiol Biotechnol       Date:  2021-06-03       Impact factor: 3.312

Review 2.  Soil Microbial Biogeography in a Changing World: Recent Advances and Future Perspectives.

Authors:  Haiyan Chu; Gui-Feng Gao; Yuying Ma; Kunkun Fan; Manuel Delgado-Baquerizo
Journal:  mSystems       Date:  2020-04-21       Impact factor: 6.496

Review 3.  A Comprehensive Insight of Current and Future Challenges in Large-Scale Soil Microbiome Analyses.

Authors:  Jean Legeay; Mohamed Hijri
Journal:  Microb Ecol       Date:  2022-06-23       Impact factor: 4.552

4.  Exploration of Soil Functional Microbiomes-A Concept Proposal for Long-Term Fertilized Grasslands.

Authors:  Vlad Stoian; Roxana Vidican; Păcurar Florin; Larisa Corcoz; Victoria Pop-Moldovan; Ioana Vaida; Sorin-Daniel Vâtcă; Valentina Ancuța Stoian; Anca Pleșa
Journal:  Plants (Basel)       Date:  2022-05-05

5.  The profile of the soil microbiota in the Cerrado is influenced by land use.

Authors:  Lucas Conceição de Souza; Luciano Procópio
Journal:  Appl Microbiol Biotechnol       Date:  2021-06-01       Impact factor: 4.813

6.  Soil microbial diversity-biomass relationships are driven by soil carbon content across global biomes.

Authors:  Felipe Bastida; David J Eldridge; Carlos García; G Kenny Png; Richard D Bardgett; Manuel Delgado-Baquerizo
Journal:  ISME J       Date:  2021-02-09       Impact factor: 10.302

7.  Soil bacterial diversity correlates with precipitation and soil pH in long-term maize cropping systems.

Authors:  Wenjun Tan; Junman Wang; Wenqing Bai; Jiejun Qi; Weimin Chen
Journal:  Sci Rep       Date:  2020-04-07       Impact factor: 4.379

8.  Site and land-use associations of soil bacteria and fungi define core and indicative taxa.

Authors:  Florian Gschwend; Martin Hartmann; Johanna Mayerhofer; Anna-Sofia Hug; Jürg Enkerli; Andreas Gubler; Reto G Meuli; Beat Frey; Franco Widmer
Journal:  FEMS Microbiol Ecol       Date:  2022-01-07       Impact factor: 4.194

  8 in total

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