Literature DB >> 30924287

Membraneless organelles: P granules in Caenorhabditis elegans.

Elisabeth A Marnik1, Dustin L Updike1.   

Abstract

Membraneless organelles are distinct compartments within a cell that are not enclosed by a traditional lipid membrane and instead form through a process called liquid-liquid phase separation. Examples of these non-membrane-bound organelles include nucleoli, stress granules, P bodies, pericentriolar material and germ granules. Many recent studies have used Caenorhabditis elegans germ granules, known as P granules, to expand our understanding of the formation of these unique cellular compartments. From this work, we know that proteins with intrinsically disordered regions (IDRs) play a critical role in the process of phase separation. IDR phase separation is further tuned through their interactions with RNA and through protein modifications such as phosphorylation and methylation. These findings from C elegans, combined with work done in other model organisms, continue to provide insight into the formation of membraneless organelles and the important role they play in compartmentalizing cellular processes.
© 2019 John Wiley & Sons A/S. Published by John Wiley & Sons Ltd.

Entities:  

Keywords:  P granules; intrinsically disordered regions; liquid phase separation; non-membrane-bound organelles

Mesh:

Substances:

Year:  2019        PMID: 30924287      PMCID: PMC6571499          DOI: 10.1111/tra.12644

Source DB:  PubMed          Journal:  Traffic        ISSN: 1398-9219            Impact factor:   6.215


  48 in total

1.  The C. elegans homolog of nucleoporin Nup98 is required for the integrity and function of germline P granules.

Authors:  Ekaterina Voronina; Geraldine Seydoux
Journal:  Development       Date:  2010-03-24       Impact factor: 6.868

2.  Pi-Pi contacts are an overlooked protein feature relevant to phase separation.

Authors:  Robert McCoy Vernon; Paul Andrew Chong; Brian Tsang; Tae Hun Kim; Alaji Bah; Patrick Farber; Hong Lin; Julie Deborah Forman-Kay
Journal:  Elife       Date:  2018-02-09       Impact factor: 8.140

3.  Regulation of the MEX-5 gradient by a spatially segregated kinase/phosphatase cycle.

Authors:  Erik E Griffin; David J Odde; Geraldine Seydoux
Journal:  Cell       Date:  2011-09-16       Impact factor: 41.582

4.  Polar Positioning of Phase-Separated Liquid Compartments in Cells Regulated by an mRNA Competition Mechanism.

Authors:  Shambaditya Saha; Christoph A Weber; Marco Nousch; Omar Adame-Arana; Carsten Hoege; Marco Y Hein; Erin Osborne-Nishimura; Julia Mahamid; Marcus Jahnel; Louise Jawerth; Andrej Pozniakovski; Christian R Eckmann; Frank Jülicher; Anthony A Hyman
Journal:  Cell       Date:  2016-09-01       Impact factor: 41.582

5.  Arginine methylation of vasa protein is conserved across phyla.

Authors:  Yohei Kirino; Anastassios Vourekas; Namwoo Kim; Flavia de Lima Alves; Juri Rappsilber; Peter S Klein; Thomas A Jongens; Zissimos Mourelatos
Journal:  J Biol Chem       Date:  2010-01-15       Impact factor: 5.157

6.  Genetic analysis of the Caenorhabditis elegans GLH family of P-granule proteins.

Authors:  Caroline Spike; Nicole Meyer; Erica Racen; April Orsborn; Jay Kirchner; Kathleen Kuznicki; Christopher Yee; Karen Bennett; Susan Strome
Journal:  Genetics       Date:  2008-04       Impact factor: 4.562

7.  Nup98 FG domains from diverse species spontaneously phase-separate into particles with nuclear pore-like permselectivity.

Authors:  Hermann Broder Schmidt; Dirk Görlich
Journal:  Elife       Date:  2015-01-06       Impact factor: 8.140

8.  A widely employed germ cell marker is an ancient disordered protein with reproductive functions in diverse eukaryotes.

Authors:  Michelle A Carmell; Gregoriy A Dokshin; Helen Skaletsky; Yueh-Chiang Hu; Josien C van Wolfswinkel; Kyomi J Igarashi; Daniel W Bellott; Michael Nefedov; Peter W Reddien; George C Enders; Vladimir N Uversky; Craig C Mello; David C Page
Journal:  Elife       Date:  2016-10-08       Impact factor: 8.140

9.  Controllable protein phase separation and modular recruitment to form responsive membraneless organelles.

Authors:  Benjamin S Schuster; Ellen H Reed; Ranganath Parthasarathy; Craig N Jahnke; Reese M Caldwell; Jessica G Bermudez; Holly Ramage; Matthew C Good; Daniel A Hammer
Journal:  Nat Commun       Date:  2018-07-30       Impact factor: 14.919

10.  A gel phase promotes condensation of liquid P granules in Caenorhabditis elegans embryos.

Authors:  Andrea Putnam; Madeline Cassani; Jarrett Smith; Geraldine Seydoux
Journal:  Nat Struct Mol Biol       Date:  2019-03-04       Impact factor: 15.369

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  29 in total

Review 1.  Phase Separation in Germ Cells and Development.

Authors:  Anne E Dodson; Scott Kennedy
Journal:  Dev Cell       Date:  2020-10-01       Impact factor: 12.270

Review 2.  Building RNA-protein germ granules: insights from the multifaceted functions of DEAD-box helicase Vasa/Ddx4 in germline development.

Authors:  Caoling Xu; Yuzhu Cao; Jianqiang Bao
Journal:  Cell Mol Life Sci       Date:  2021-12-18       Impact factor: 9.261

3.  The Caenorhabditis elegans TDRD5/7-like protein, LOTR-1, interacts with the helicase ZNFX-1 to balance epigenetic signals in the germline.

Authors:  Elisabeth A Marnik; Miguel V Almeida; P Giselle Cipriani; George Chung; Edoardo Caspani; Emil Karaulanov; Hin Hark Gan; John Zinno; Ida J Isolehto; Fridolin Kielisch; Falk Butter; Catherine S Sharp; Roisin M Flanagan; Frederic X Bonnet; Fabio Piano; René F Ketting; Kristin C Gunsalus; Dustin L Updike
Journal:  PLoS Genet       Date:  2022-06-03       Impact factor: 6.020

4.  Cell-free reconstitution of multi-condensate assemblies.

Authors:  Andrea Putnam; Geraldine Seydoux
Journal:  Methods Enzymol       Date:  2020-10-20       Impact factor: 1.600

5.  A proteomics approach identifies novel resident zebrafish Balbiani body proteins Cirbpa and Cirbpb.

Authors:  Allison H Jamieson-Lucy; Manami Kobayashi; Y James Aykit; Yaniv M Elkouby; Matias Escobar-Aguirre; Charles E Vejnar; Antonio J Giraldez; Mary C Mullins
Journal:  Dev Biol       Date:  2022-01-20       Impact factor: 3.582

Review 6.  Small RNAs and chromatin in the multigenerational epigenetic landscape of Caenorhabditis elegans.

Authors:  Natalya Frolows; Alyson Ashe
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2021-04-19       Impact factor: 6.671

Review 7.  DEAD-Box RNA Helicases in Cell Cycle Control and Clinical Therapy.

Authors:  Lu Zhang; Xiaogang Li
Journal:  Cells       Date:  2021-06-18       Impact factor: 6.600

8.  Deciphering the Role of π-Interactions in Polyelectrolyte Complexes Using Rationally Designed Peptides.

Authors:  Sara Tabandeh; Cristina Elisabeth Lemus; Lorraine Leon
Journal:  Polymers (Basel)       Date:  2021-06-24       Impact factor: 4.329

Review 9.  Stress Granules and Neurodegenerative Disorders: A Scoping Review.

Authors:  Mohammad Reza Asadi; Marziyeh Sadat Moslehian; Hani Sabaie; Abbas Jalaiei; Soudeh Ghafouri-Fard; Mohammad Taheri; Maryam Rezazadeh
Journal:  Front Aging Neurosci       Date:  2021-06-23       Impact factor: 5.750

10.  DLC-1 facilitates germ granule assembly in Caenorhabditis elegans embryo.

Authors:  Nicholas J Day; Mary Ellenbecker; Xiaobo Wang; Ekaterina Voronina
Journal:  Mol Biol Cell       Date:  2022-03-11       Impact factor: 3.612

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