Literature DB >> 30898334

A Snapshot on the Cis Chromatin Response to DNA Double-Strand Breaks.

Thomas Clouaire1, Gaëlle Legube2.   

Abstract

In eukaryotes, detection and repair of DNA double-strand breaks (DSBs) operate within chromatin, an incredibly complex structure that tightly packages and regulates DNA metabolism. Chromatin participates in the repair of these lesions at multiple steps, from detection to genomic sequence recovery and chromatin is itself extensively modified during the repair process. In recent years, new methodologies and dedicated techniques have expanded the experimental toolbox, opening up a new era granting the high-resolution analysis of chromatin modifications at annotated DSBs in a genome-wide manner. A complex picture is starting to emerge whereby chromatin is altered at various scales around DSBs, in a manner that relates to the repair pathway used, hence defining a 'repair histone code'. Here, we review the recent advances regarding our knowledge of the chromatin landscape induced in cis around DSBs, with an emphasis on histone post-translational modifications and histone variants.
Copyright © 2019 The Authors. Published by Elsevier Ltd.. All rights reserved.

Entities:  

Keywords:  chromatin modifications; double-strand breaks; repair histone code

Mesh:

Substances:

Year:  2019        PMID: 30898334     DOI: 10.1016/j.tig.2019.02.003

Source DB:  PubMed          Journal:  Trends Genet        ISSN: 0168-9525            Impact factor:   11.639


  28 in total

Review 1.  Preserving genome integrity and function: the DNA damage response and histone modifications.

Authors:  Jae Jin Kim; Seo Yun Lee; Kyle M Miller
Journal:  Crit Rev Biochem Mol Biol       Date:  2019-06-04       Impact factor: 8.250

Review 2.  Non-canonical DNA/RNA structures during Transcription-Coupled Double-Strand Break Repair: Roadblocks or Bona fide repair intermediates?

Authors:  Nadine Puget; Kyle M Miller; Gaëlle Legube
Journal:  DNA Repair (Amst)       Date:  2019-07-08

3.  Assessing kinetics and recruitment of DNA repair factors using high content screens.

Authors:  Barbara Martinez-Pastor; Giorgia G Silveira; Thomas L Clarke; Dudley Chung; Yuchao Gu; Claudia Cosentino; Lance S Davidow; Gadea Mata; Sylvana Hassanieh; Jayme Salsman; Alberto Ciccia; Narkhyun Bae; Mark T Bedford; Diego Megias; Lee L Rubin; Alejo Efeyan; Graham Dellaire; Raul Mostoslavsky
Journal:  Cell Rep       Date:  2021-12-28       Impact factor: 9.423

Review 4.  Chaperoning histones at the DNA repair dance.

Authors:  Ujani Chakraborty; Zih-Jie Shen; Jessica Tyler
Journal:  DNA Repair (Amst)       Date:  2021-10-13

Review 5.  Transcriptional regulation and chromatin dynamics at DNA double-strand breaks.

Authors:  Sunwoo Min; Jae-Hoon Ji; Yungyeong Heo; Hyeseong Cho
Journal:  Exp Mol Med       Date:  2022-10-13       Impact factor: 12.153

6.  Cas9 deactivation with photocleavable guide RNAs.

Authors:  Roger S Zou; Yang Liu; Bin Wu; Taekjip Ha
Journal:  Mol Cell       Date:  2021-03-03       Impact factor: 17.970

Review 7.  Collaborations between chromatin and nuclear architecture to optimize DNA repair fidelity.

Authors:  Beata Mackenroth; Eric Alani
Journal:  DNA Repair (Amst)       Date:  2020-11-22

8.  Poly(ADP-ribose) binding and macroH2A mediate recruitment and functions of KDM5A at DNA lesions.

Authors:  Ramhari Kumbhar; Anthony Sanchez; Jullian Perren; Fade Gong; David Corujo; Frank Medina; Sravan K Devanathan; Blerta Xhemalce; Andreas Matouschek; Marcus Buschbeck; Bethany A Buck-Koehntop; Kyle M Miller
Journal:  J Cell Biol       Date:  2021-05-18       Impact factor: 10.539

Review 9.  DNA Repair Pathway Choices in CRISPR-Cas9-Mediated Genome Editing.

Authors:  Chaoyou Xue; Eric C Greene
Journal:  Trends Genet       Date:  2021-04-22       Impact factor: 11.821

10.  Schizosaccharomyces pombe KAT5 contributes to resection and repair of a DNA double-strand break.

Authors:  Tingting Li; Ruben C Petreaca; Susan L Forsburg
Journal:  Genetics       Date:  2021-05-17       Impact factor: 4.562

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