Literature DB >> 30948513

Phase separation of RNA-binding proteins in physiology and disease: An introduction to the JBC Reviews thematic series.

James Shorter1.   

Abstract

In recent years, there has been a jarring awakening that liquid-liquid phase separation (LLPS) of key protein and nucleic acid scaffolds underpins the biogenesis of diverse membraneless organelles, including P granules and stress granules in the cytoplasm and nucleoli and paraspeckles in the nucleus. These biomolecular condensates are proposed to be critical organizers of subcellular biochemistry and to control the flow of information from genotype to phenotype. Despite clear biological utility, LLPS can also have deleterious outcomes. Phase-separated compartments can concentrate specific RNA-binding proteins (RBPs), such as TDP-43 and fused in sarcoma (FUS), that through low-complexity, prion-like domains have an intrinsic tendency to form self-templating fibrils that are closely tied to fatal neurodegenerative disorders such as amyotrophic lateral sclerosis (ALS) and frontotemporal dementia. This series of reviews illuminates the molecular language underlying membraneless organelle biogenesis, how prion-like domains and post-translational modifications regulate phase behavior, how cells exploit the phase-separation process for adaptive modalities, and how phase separation is corrupted in neurodegenerative diseases. Collectively, these pieces provide a cutting-edge view of our functional and mechanistic understanding of phase separation in physiology and disease.
© 2019 Shorter.

Entities:  

Keywords:  Liquid–liquid phase separation; RNA-binding protein; TAR DNA-binding protein 43 (TDP-43) (TARDBP); amyotrophic lateral sclerosis (ALS) (Lou Gehrig disease); biomolecular condensates; frontotemporal dementia; fused in sarcoma (FUS); heterogeneous nuclear ribonucleoprotein (hnRNP); membraneless organelles

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Year:  2019        PMID: 30948513      PMCID: PMC6509514          DOI: 10.1074/jbc.REV119.007944

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  5 in total

Review 1.  Cellular sensing by phase separation: Using the process, not just the products.

Authors:  Haneul Yoo; Catherine Triandafillou; D Allan Drummond
Journal:  J Biol Chem       Date:  2019-03-15       Impact factor: 5.157

Review 2.  The molecular language of membraneless organelles.

Authors:  Edward Gomes; James Shorter
Journal:  J Biol Chem       Date:  2018-07-25       Impact factor: 5.157

Review 3.  Friend or foe-Post-translational modifications as regulators of phase separation and RNP granule dynamics.

Authors:  Mario Hofweber; Dorothee Dormann
Journal:  J Biol Chem       Date:  2018-12-26       Impact factor: 5.157

Review 4.  Prion-like low-complexity sequences: Key regulators of protein solubility and phase behavior.

Authors:  Titus M Franzmann; Simon Alberti
Journal:  J Biol Chem       Date:  2018-06-19       Impact factor: 5.157

Review 5.  Matter over mind: Liquid phase separation and neurodegeneration.

Authors:  Shana Elbaum-Garfinkle
Journal:  J Biol Chem       Date:  2019-03-26       Impact factor: 5.157

  5 in total
  9 in total

Review 1.  The (un)structural biology of biomolecular liquid-liquid phase separation using NMR spectroscopy.

Authors:  Anastasia C Murthy; Nicolas L Fawzi
Journal:  J Biol Chem       Date:  2020-01-07       Impact factor: 5.157

Review 2.  Regulation of pluripotency and reprogramming by RNA binding proteins.

Authors:  Dan Li; Mohamed S Kishta; Jianlong Wang
Journal:  Curr Top Dev Biol       Date:  2020-02-25       Impact factor: 4.897

Review 3.  RNA-binding proteins and long noncoding RNAs in intestinal epithelial autophagy and barrier function.

Authors:  Lan Xiao; Jaladanki N Rao; Jian-Ying Wang
Journal:  Tissue Barriers       Date:  2021-03-12

4.  Spatial control of nucleoporin condensation by fragile X-related proteins.

Authors:  Arantxa Agote-Aran; Stephane Schmucker; Katerina Jerabkova; Inès Jmel Boyer; Alessandro Berto; Laura Pacini; Paolo Ronchi; Charlotte Kleiss; Laurent Guerard; Yannick Schwab; Hervé Moine; Jean-Louis Mandel; Sebastien Jacquemont; Claudia Bagni; Izabela Sumara
Journal:  EMBO J       Date:  2020-07-24       Impact factor: 11.598

Review 5.  Dr. Jekyll and Mr. Hyde? Physiology and Pathology of Neuronal Stress Granules.

Authors:  Pureum Jeon; Jin A Lee
Journal:  Front Cell Dev Biol       Date:  2021-02-25

Review 6.  Glial Cell Dysfunction in C9orf72-Related Amyotrophic Lateral Sclerosis and Frontotemporal Dementia.

Authors:  Mehdi Ghasemi; Kiandokht Keyhanian; Catherine Douthwright
Journal:  Cells       Date:  2021-01-28       Impact factor: 6.600

7.  Stochasticity, Entropy and Neurodegeneration.

Authors:  Peter K Panegyres
Journal:  Brain Sci       Date:  2022-02-07

8.  Prediction of liquid-liquid phase separating proteins using machine learning.

Authors:  Xiaoquan Chu; Tanlin Sun; Qian Li; Youjun Xu; Zhuqing Zhang; Luhua Lai; Jianfeng Pei
Journal:  BMC Bioinformatics       Date:  2022-02-15       Impact factor: 3.169

Review 9.  Protein Aggregation in the Pathogenesis of Ischemic Stroke.

Authors:  Shusheng Wu; Longfei Du
Journal:  Cell Mol Neurobiol       Date:  2020-06-11       Impact factor: 5.046

  9 in total

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