Literature DB >> 30873835

Complete Phase Diagram for Liquid-Liquid Phase Separation of Intrinsically Disordered Proteins.

James McCarty1,2, Kris T Delaney2, Scott P O Danielsen2,3, Glenn H Fredrickson2,3,4, Joan-Emma Shea1,2,5.   

Abstract

A number of intrinsically disordered proteins have been shown to self-assemble via liquid-liquid phase separation into protein-rich and dilute phases. The resulting coacervates can have important biological functions, and the ability to form these assemblies is dictated by the protein's primary amino acid sequence as well as by the solution conditions. We present a complete phase diagram for the simple coacervation of a polyampholyte intrinsically disordered protein using a field-theoretic simulation approach. We show that differences in the primary amino acid sequence and in the distribution of charged amino acids along the sequence lead to differences in the phase window for coacervation, with block-charged sequences having a larger coacervation window than sequences with a random patterning of charges. The model also captures how changing solution conditions modifies the phase diagram and can serve to guide experimental studies.

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Year:  2019        PMID: 30873835     DOI: 10.1021/acs.jpclett.9b00099

Source DB:  PubMed          Journal:  J Phys Chem Lett        ISSN: 1948-7185            Impact factor:   6.475


  48 in total

1.  Molecular design of self-coacervation phenomena in block polyampholytes.

Authors:  Scott P O Danielsen; James McCarty; Joan-Emma Shea; Kris T Delaney; Glenn H Fredrickson
Journal:  Proc Natl Acad Sci U S A       Date:  2019-04-04       Impact factor: 11.205

2.  Viscoelasticity of biomolecular condensates conforms to the Jeffreys model.

Authors:  Huan-Xiang Zhou
Journal:  J Chem Phys       Date:  2021-01-28       Impact factor: 3.488

3.  Comparative roles of charge, π, and hydrophobic interactions in sequence-dependent phase separation of intrinsically disordered proteins.

Authors:  Suman Das; Yi-Hsuan Lin; Robert M Vernon; Julie D Forman-Kay; Hue Sun Chan
Journal:  Proc Natl Acad Sci U S A       Date:  2020-11-02       Impact factor: 11.205

Review 4.  Bacterial functional amyloids: Order from disorder.

Authors:  Neha Jain; Matthew R Chapman
Journal:  Biochim Biophys Acta Proteins Proteom       Date:  2019-06-10       Impact factor: 3.036

Review 5.  Dynamic conformational flexibility and molecular interactions of intrinsically disordered proteins.

Authors:  Anil Bhattarai; Isaac Arnold Emerson
Journal:  J Biosci       Date:  2020       Impact factor: 1.826

6.  Mesoscale Liquid Model of Chromatin Recapitulates Nuclear Order of Eukaryotes.

Authors:  Rabia Laghmach; Michele Di Pierro; Davit A Potoyan
Journal:  Biophys J       Date:  2019-09-17       Impact factor: 4.033

7.  An analytical theory to describe sequence-specific inter-residue distance profiles for polyampholytes and intrinsically disordered proteins.

Authors:  Jonathan Huihui; Kingshuk Ghosh
Journal:  J Chem Phys       Date:  2020-04-30       Impact factor: 3.488

8.  A unified analytical theory of heteropolymers for sequence-specific phase behaviors of polyelectrolytes and polyampholytes.

Authors:  Yi-Hsuan Lin; Jacob P Brady; Hue Sun Chan; Kingshuk Ghosh
Journal:  J Chem Phys       Date:  2020-01-31       Impact factor: 3.488

9.  Identifying sequence perturbations to an intrinsically disordered protein that determine its phase-separation behavior.

Authors:  Benjamin S Schuster; Gregory L Dignon; Wai Shing Tang; Fleurie M Kelley; Aishwarya Kanchi Ranganath; Craig N Jahnke; Alison G Simpkins; Roshan Mammen Regy; Daniel A Hammer; Matthew C Good; Jeetain Mittal
Journal:  Proc Natl Acad Sci U S A       Date:  2020-05-11       Impact factor: 11.205

10.  Determination of Condensate Material Properties from Droplet Deformation.

Authors:  Huan-Xiang Zhou
Journal:  J Phys Chem B       Date:  2020-09-16       Impact factor: 2.991

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