Literature DB >> 30948640

Molecular design of self-coacervation phenomena in block polyampholytes.

Scott P O Danielsen1,2, James McCarty2,3, Joan-Emma Shea2,3,4, Kris T Delaney5, Glenn H Fredrickson6,2,7.   

Abstract

Coacervation is a common phenomenon in natural polymers and has been applied to synthetic materials systems for coatings, adhesives, and encapsulants. Single-component coacervates are formed when block polyampholytes exhibit self-coacervation, phase separating into a dense liquid coacervate phase rich in the polyampholyte coexisting with a dilute supernatant phase, a process implicated in the liquid-liquid phase separation of intrinsically disordered proteins. Using fully fluctuating field-theoretic simulations using complex Langevin sampling and complementary molecular-dynamics simulations, we develop molecular design principles to connect the sequenced charge pattern of a polyampholyte with its self-coacervation behavior in solution. In particular, the lengthscale of charged blocks and number of connections between oppositely charged blocks are shown to have a dramatic effect on the tendency to phase separate and on the accessible chain conformations. The field and particle-based simulation results are compared with analytical predictions from the random phase approximation (RPA) and postulated scaling relationships. The qualitative trends are mostly captured by the RPA, but the approximation fails catastrophically at low concentration.

Entities:  

Keywords:  chain conformation; coacervation; polyampholyte; sequence

Year:  2019        PMID: 30948640      PMCID: PMC6486786          DOI: 10.1073/pnas.1900435116

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  36 in total

1.  Why are "natively unfolded" proteins unstructured under physiologic conditions?

Authors:  V N Uversky; J R Gillespie; A L Fink
Journal:  Proteins       Date:  2000-11-15

2.  Phase separation in polyelectrolyte solutions; theory of complex coacervation.

Authors:  J T OVERBEEK; M J VOORN
Journal:  J Cell Physiol Suppl       Date:  1957-05

3.  Improved complex Langevin method for (2+1)-dimensional lattices.

Authors: 
Journal:  Phys Rev D Part Fields       Date:  1992-03-15

4.  Investigation of the interfacial tension of complex coacervates using field-theoretic simulations.

Authors:  Robert A Riggleman; Rajeev Kumar; Glenn H Fredrickson
Journal:  J Chem Phys       Date:  2012-01-14       Impact factor: 3.488

5.  Fluctuation in electrolyte solutions: the self energy.

Authors:  Zhen-Gang Wang
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2010-02-09

Review 6.  Biogenesis of nuclear bodies.

Authors:  Miroslav Dundr; Tom Misteli
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-11-10       Impact factor: 10.005

7.  Phase behavior of polyampholytes from charged hard-sphere chain model.

Authors:  Jianwen Jiang; Jian Feng; Honglai Liu; Ying Hu
Journal:  J Chem Phys       Date:  2006-04-14       Impact factor: 3.488

8.  Germline P granules are liquid droplets that localize by controlled dissolution/condensation.

Authors:  Clifford P Brangwynne; Christian R Eckmann; David S Courson; Agata Rybarska; Carsten Hoege; Jöbin Gharakhani; Frank Jülicher; Anthony A Hyman
Journal:  Science       Date:  2009-05-21       Impact factor: 47.728

9.  Complex coacervation: a field theoretic simulation study of polyelectrolyte complexation.

Authors:  Jonghoon Lee; Yuri O Popov; Glenn H Fredrickson
Journal:  J Chem Phys       Date:  2008-06-14       Impact factor: 3.488

10.  Ultrasoft primitive model of polyionic solutions: structure, aggregation, and dynamics.

Authors:  Daniele Coslovich; Jean-Pierre Hansen; Gerhard Kahl
Journal:  J Chem Phys       Date:  2011-06-28       Impact factor: 3.488

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  11 in total

1.  Comparative roles of charge, π, and hydrophobic interactions in sequence-dependent phase separation of intrinsically disordered proteins.

Authors:  Suman Das; Yi-Hsuan Lin; Robert M Vernon; Julie D Forman-Kay; Hue Sun Chan
Journal:  Proc Natl Acad Sci U S A       Date:  2020-11-02       Impact factor: 11.205

2.  An analytical theory to describe sequence-specific inter-residue distance profiles for polyampholytes and intrinsically disordered proteins.

Authors:  Jonathan Huihui; Kingshuk Ghosh
Journal:  J Chem Phys       Date:  2020-04-30       Impact factor: 3.488

3.  A unified analytical theory of heteropolymers for sequence-specific phase behaviors of polyelectrolytes and polyampholytes.

Authors:  Yi-Hsuan Lin; Jacob P Brady; Hue Sun Chan; Kingshuk Ghosh
Journal:  J Chem Phys       Date:  2020-01-31       Impact factor: 3.488

4.  Numerical Techniques for Applications of Analytical Theories to Sequence-Dependent Phase Separations of Intrinsically Disordered Proteins.

Authors:  Yi-Hsuan Lin; Jonas Wessén; Tanmoy Pal; Suman Das; Hue Sun Chan
Journal:  Methods Mol Biol       Date:  2023

5.  Driving force and pathway in polyelectrolyte complex coacervation.

Authors:  Shensheng Chen; Zhen-Gang Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2022-08-29       Impact factor: 12.779

6.  Thermodynamics and kinetics of phase separation of protein-RNA mixtures by a minimal model.

Authors:  Jerelle A Joseph; Jorge R Espinosa; Ignacio Sanchez-Burgos; Adiran Garaizar; Daan Frenkel; Rosana Collepardo-Guevara
Journal:  Biophys J       Date:  2021-02-09       Impact factor: 4.033

Review 7.  The Protein Folding Problem: The Role of Theory.

Authors:  Roy Nassar; Gregory L Dignon; Rostam M Razban; Ken A Dill
Journal:  J Mol Biol       Date:  2021-07-03       Impact factor: 6.151

8.  Biomolecular Condensates: Sequence Determinants of Phase Separation, Microstructural Organization, Enzymatic Activity, and Material Properties.

Authors:  Benjamin S Schuster; Roshan Mammen Regy; Elliott M Dolan; Aishwarya Kanchi Ranganath; Nina Jovic; Sagar D Khare; Zheng Shi; Jeetain Mittal
Journal:  J Phys Chem B       Date:  2021-03-04       Impact factor: 3.466

Review 9.  Rules of Physical Mathematics Govern Intrinsically Disordered Proteins.

Authors:  Kingshuk Ghosh; Jonathan Huihui; Michael Phillips; Austin Haider
Journal:  Annu Rev Biophys       Date:  2022-02-04       Impact factor: 19.763

10.  Does liquid-liquid phase separation drive peptide folding?

Authors:  Dean N Edun; Meredith R Flanagan; Arnaldo L Serrano
Journal:  Chem Sci       Date:  2020-12-29       Impact factor: 9.825

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