Literature DB >> 30833788

A folded conformation of MukBEF and cohesin.

Frank Bürmann1, Byung-Gil Lee1, Thane Than2, Ludwig Sinn3, Francis J O'Reilly3, Stanislau Yatskevich4,1, Juri Rappsilber3,5, Bin Hu2, Kim Nasmyth4, Jan Löwe6.   

Abstract

Structural maintenance of chromosomes (SMC)-kleisin complexes organize chromosomal DNAs in all domains of life, with key roles in chromosome segregation, DNA repair and regulation of gene expression. They function through the entrapment and active translocation of DNA, but the underlying conformational changes are largely unclear. Using structural biology, mass spectrometry and cross-linking, we investigated the architecture of two evolutionarily distant SMC-kleisin complexes: MukBEF from Escherichia coli, and cohesin from Saccharomyces cerevisiae. We show that both contain a dynamic coiled-coil discontinuity, the elbow, near the middle of their arms that permits a folded conformation. Bending at the elbow brings into proximity the hinge dimerization domain and the head-kleisin module, situated at opposite ends of the arms. Our findings favour SMC activity models that include a large conformational change in the arms, such as a relative movement between DNA contact sites during DNA loading and translocation.

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Year:  2019        PMID: 30833788      PMCID: PMC6433275          DOI: 10.1038/s41594-019-0196-z

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  86 in total

1.  Crystal structure of the SMC head domain: an ABC ATPase with 900 residues antiparallel coiled-coil inserted.

Authors:  J Löwe; S C Cordell; F van den Ent
Journal:  J Mol Biol       Date:  2001-02-09       Impact factor: 5.469

2.  Antagonistic interactions of kleisins and DNA with bacterial Condensin MukB.

Authors:  Zoya M Petrushenko; Chien-Hung Lai; Valentin V Rybenkov
Journal:  J Biol Chem       Date:  2006-09-18       Impact factor: 5.157

3.  Bacillus subtilis SMC complexes juxtapose chromosome arms as they travel from origin to terminus.

Authors:  Xindan Wang; Hugo B Brandão; Tung B K Le; Michael T Laub; David Z Rudner
Journal:  Science       Date:  2017-02-03       Impact factor: 47.728

4.  MSAProbs: multiple sequence alignment based on pair hidden Markov models and partition function posterior probabilities.

Authors:  Yongchao Liu; Bertil Schmidt; Douglas L Maskell
Journal:  Bioinformatics       Date:  2010-06-23       Impact factor: 6.937

5.  Characterization of a prokaryotic SMC protein involved in chromosome partitioning.

Authors:  R A Britton; D C Lin; A D Grossman
Journal:  Genes Dev       Date:  1998-05-01       Impact factor: 11.361

6.  Multiscale Structuring of the E. coli Chromosome by Nucleoid-Associated and Condensin Proteins.

Authors:  Virginia S Lioy; Axel Cournac; Martial Marbouty; Stéphane Duigou; Julien Mozziconacci; Olivier Espéli; Frédéric Boccard; Romain Koszul
Journal:  Cell       Date:  2018-01-18       Impact factor: 41.582

7.  Overview of the CCP4 suite and current developments.

Authors:  Martyn D Winn; Charles C Ballard; Kevin D Cowtan; Eleanor J Dodson; Paul Emsley; Phil R Evans; Ronan M Keegan; Eugene B Krissinel; Andrew G W Leslie; Airlie McCoy; Stuart J McNicholas; Garib N Murshudov; Navraj S Pannu; Elizabeth A Potterton; Harold R Powell; Randy J Read; Alexei Vagin; Keith S Wilson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

8.  DNA Entry into and Exit out of the Cohesin Ring by an Interlocking Gate Mechanism.

Authors:  Yasuto Murayama; Frank Uhlmann
Journal:  Cell       Date:  2015-12-17       Impact factor: 41.582

9.  Quirks of Error Estimation in Cross-Linking/Mass Spectrometry.

Authors:  Lutz Fischer; Juri Rappsilber
Journal:  Anal Chem       Date:  2017-03-24       Impact factor: 6.986

10.  MatP regulates the coordinated action of topoisomerase IV and MukBEF in chromosome segregation.

Authors:  Sophie Nolivos; Amy L Upton; Anjana Badrinarayanan; Julius Müller; Katarzyna Zawadzka; Jakub Wiktor; Amber Gill; Lidia Arciszewska; Emilien Nicolas; David Sherratt
Journal:  Nat Commun       Date:  2016-01-28       Impact factor: 14.919

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  43 in total

Review 1.  The Many Roles of Cohesin in Drosophila Gene Transcription.

Authors:  Dale Dorsett
Journal:  Trends Genet       Date:  2019-05-23       Impact factor: 11.639

Review 2.  Genome folding through loop extrusion by SMC complexes.

Authors:  Iain F Davidson; Jan-Michael Peters
Journal:  Nat Rev Mol Cell Biol       Date:  2021-03-25       Impact factor: 94.444

3.  Transient DNA Occupancy of the SMC Interarm Space in Prokaryotic Condensin.

Authors:  Roberto Vazquez Nunez; Laura B Ruiz Avila; Stephan Gruber
Journal:  Mol Cell       Date:  2019-06-11       Impact factor: 17.970

4.  Braiding topology and the energy landscape of chromosome organization proteins.

Authors:  Dana Krepel; Aram Davtyan; Nicholas P Schafer; Peter G Wolynes; José N Onuchic
Journal:  Proc Natl Acad Sci U S A       Date:  2019-12-30       Impact factor: 11.205

5.  Human cohesin compacts DNA by loop extrusion.

Authors:  Yoori Kim; Zhubing Shi; Hongshan Zhang; Ilya J Finkelstein; Hongtao Yu
Journal:  Science       Date:  2019-11-28       Impact factor: 47.728

Review 6.  Structural insights into DNA loop extrusion by SMC protein complexes.

Authors:  Sumanjit Datta; Léa Lecomte; Christian H Haering
Journal:  Curr Opin Struct Biol       Date:  2020-07-13       Impact factor: 6.809

7.  Integrative analysis reveals unique structural and functional features of the Smc5/6 complex.

Authors:  You Yu; Shibai Li; Zheng Ser; Tanmoy Sanyal; Koyi Choi; Bingbing Wan; Huihui Kuang; Andrej Sali; Alex Kentsis; Dinshaw J Patel; Xiaolan Zhao
Journal:  Proc Natl Acad Sci U S A       Date:  2021-05-11       Impact factor: 11.205

8.  SUMO is a pervasive regulator of meiosis.

Authors:  Nikhil R Bhagwat; Shannon N Owens; Masaru Ito; Jay V Boinapalli; Philip Poa; Alexander Ditzel; Srujan Kopparapu; Meghan Mahalawat; Owen Richard Davies; Sean R Collins; Jeffrey R Johnson; Nevan J Krogan; Neil Hunter
Journal:  Elife       Date:  2021-01-27       Impact factor: 8.140

9.  The Smc5/6 Core Complex Is a Structure-Specific DNA Binding and Compacting Machine.

Authors:  Diego Serrano; Gustavo Cordero; Ryo Kawamura; Aleksandr Sverzhinsky; Muzaddid Sarker; Shamayita Roy; Catherine Malo; John M Pascal; John F Marko; Damien D'Amours
Journal:  Mol Cell       Date:  2020-12-09       Impact factor: 17.970

10.  Folding of cohesin's coiled coil is important for Scc2/4-induced association with chromosomes.

Authors:  Naomi J Petela; Andres Gonzalez Llamazares; Sarah Dixon; Bin Hu; Byung-Gil Lee; Jean Metson; Heekyo Seo; Antonio Ferrer-Harding; Menelaos Voulgaris; Thomas Gligoris; James Collier; Byung-Ha Oh; Jan Löwe; Kim A Nasmyth
Journal:  Elife       Date:  2021-07-14       Impact factor: 8.140

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