| Literature DB >> 30713731 |
Selma Bourichi1, Youssef Kandri Rodi1, Tuncer Hökelek2, Amal Haoudi1, Catherine Renard3, Frédéric Capet3.
Abstract
The title compound, C15H11BrClN3, is built up from a planar imidazo[4,5-b]pyridine unit linked to phenyl and allyl substituents. The allyl substituent is rotated significantly out of the imidazo[4,5-b]pyridine plane, while the benzene ring is inclined by 3.84 (6)° to the ring system. In the crystal, mol-ecules are linked via a pair of weak inter-molecular C-H⋯N hydrogen bonds, forming an inversion dimer with an R 2 2(20) ring motif. The dimers are further connected by π-π stacking inter-actions between the imidazo[4,5-b]pyridine ring systems [centroid-centroid distances = 3.7161 (13) and 3.8478 (13) Å]. The important contributions to the Hirshfeld surface are H⋯H (35.9%), H⋯Cl/Cl⋯H (15.0%), H⋯C/C⋯H (12.4%), H⋯Br/Br⋯H (10.8%), H⋯N/N⋯H (7.5%), C⋯Br/Br⋯C (5.9%), C⋯C (5.5%) and C⋯N/N⋯C (4.0%) contacts.Entities:
Keywords: Hirshfeld surface; crystal structure; imidazo[4,5-b]pyridine
Year: 2019 PMID: 30713731 PMCID: PMC6323872 DOI: 10.1107/S2056989018017322
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of the title compound, showing the atom-numbering scheme. Displacement ellipsoids are drawn at the 50% probability level.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C15—H15 | 0.93 | 2.59 | 3.454 (4) | 155 |
Symmetry code: (i) .
Figure 2A part of the packing diagram of the title compound, viewed down [010]. The weak intermolecular C—H⋯N hydrogen bonds are shown as dashed lines. H atoms not involved in the hydrogen bonding have been omitted for clarity.
Figure 3View of the three-dimensional Hirshfeld surface of the title compound plotted over d norm in the range −0.1373 to 1.1294 a.u.
Figure 4Hirshfeld surface of the title compound plotted over shape index.
Figure 5The full two-dimensional fingerprint plots for the title compound, showing (a) all contacts, and delineated into (b) H⋯H, (c) H⋯Cl/Cl⋯H, (d) H⋯C/C⋯H, (e) H⋯Br/Br⋯H, (f) H⋯N/N⋯H, (g) C⋯Br/Br⋯C, (h) C⋯C, (i) C⋯N/N⋯C, (j) C⋯Cl/Cl⋯C, (k) N⋯Br/Br⋯N and (l) N⋯N contacts. The d i and d e values are the closest internal and external distances (in Å) from given points on the Hirshfeld surface contacts.
Figure 6The Hirshfeld surface representations with the function d norm plotted onto the surface for (a) H⋯H, (b) H⋯Cl/Cl⋯H, (c) H⋯C/C⋯H, (d) H⋯Br/Br⋯H, (e) H⋯N/N⋯H, (f) C⋯Br/Br⋯C, (g) C⋯C and (h) C⋯N/N⋯C contacts.
Experimental details
| Crystal data | |
| Chemical formula | C15H11BrClN3 |
|
| 348.63 |
| Crystal system, space group | Triclinic, |
| Temperature (K) | 296 |
|
| 7.6218 (5), 8.5238 (5), 11.1093 (7) |
| α, β, γ (°) | 95.739 (3), 98.880 (3), 94.979 (3) |
|
| 705.66 (8) |
|
| 2 |
| Radiation type | Mo |
| μ (mm−1) | 3.09 |
| Crystal size (mm) | 0.3 × 0.23 × 0.06 |
| Data collection | |
| Diffractometer | Bruker APEXII CCD |
| Absorption correction | Multi-scan ( |
|
| 0.591, 0.746 |
| No. of measured, independent and observed [ | 31084, 4288, 3226 |
|
| 0.033 |
| (sin θ/λ)max (Å−1) | 0.715 |
| Refinement | |
|
| 0.035, 0.089, 1.03 |
| No. of reflections | 4288 |
| No. of parameters | 181 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.57, −0.47 |
Computer programs: APEX2 and SAINT (Bruker, 2015 ▸), SHELXT (Sheldrick, 2015a ▸), SHELXL (Sheldrick, 2015b ▸), ORTEP-3 for Windows and WinGX (Farrugia, 2012 ▸) and PLATON (Spek, 2015 ▸).
| C15H11BrClN3 | |
| Triclinic, | |
| Mo | |
| Cell parameters from 9961 reflections | |
| θ = 2.4–25.8° | |
| α = 95.739 (3)° | µ = 3.09 mm−1 |
| β = 98.880 (3)° | |
| γ = 94.979 (3)° | Plate, colourless |
| 0.3 × 0.23 × 0.06 mm |
| Bruker APEX-II CCD diffractometer | 3226 reflections with |
| φ and ω scans | |
| Absorption correction: multi-scan (SADABS; Bruker, 2014) | θmax = 30.5°, θmin = 1.9° |
| 31084 measured reflections | |
| 4288 independent reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max = 0.002 | |
| 4288 reflections | Δρmax = 0.57 e Å−3 |
| 181 parameters | Δρmin = −0.47 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Br1 | 0.17874 (3) | 1.01452 (2) | 0.68946 (2) | 0.05997 (10) | |
| Cl1 | 0.27559 (10) | −0.20635 (8) | 0.05226 (6) | 0.07320 (19) | |
| N1 | 0.1843 (2) | 0.4932 (2) | 0.37610 (15) | 0.0451 (4) | |
| N2 | 0.3231 (2) | 0.36057 (19) | 0.53108 (14) | 0.0408 (3) | |
| N3 | 0.3389 (2) | 0.57048 (19) | 0.69517 (14) | 0.0416 (3) | |
| C1 | 0.3258 (3) | 0.0867 (2) | 0.36107 (18) | 0.0460 (4) | |
| H1 | 0.3669 | 0.0842 | 0.4441 | 0.055* | |
| C2 | 0.3317 (3) | −0.0449 (3) | 0.27905 (19) | 0.0502 (5) | |
| H2 | 0.3753 | −0.1360 | 0.3063 | 0.060* | |
| C3 | 0.2715 (3) | −0.0391 (3) | 0.15560 (19) | 0.0506 (5) | |
| C4 | 0.2054 (3) | 0.0941 (3) | 0.11321 (19) | 0.0538 (5) | |
| H4 | 0.1664 | 0.0962 | 0.0299 | 0.065* | |
| C5 | 0.1979 (3) | 0.2241 (3) | 0.19575 (19) | 0.0493 (5) | |
| H5 | 0.1515 | 0.3137 | 0.1678 | 0.059* | |
| C6 | 0.2590 (3) | 0.2232 (2) | 0.32120 (17) | 0.0420 (4) | |
| C7 | 0.2538 (2) | 0.3616 (2) | 0.40937 (17) | 0.0400 (4) | |
| C8 | 0.2942 (2) | 0.5038 (2) | 0.57750 (16) | 0.0390 (4) | |
| C9 | 0.2078 (3) | 0.5896 (2) | 0.48503 (17) | 0.0408 (4) | |
| C10 | 0.1670 (3) | 0.7408 (2) | 0.51508 (19) | 0.0453 (4) | |
| H10 | 0.1095 | 0.7982 | 0.4567 | 0.054* | |
| C11 | 0.2162 (3) | 0.8041 (2) | 0.63802 (19) | 0.0444 (4) | |
| C12 | 0.3010 (3) | 0.7204 (2) | 0.72501 (18) | 0.0452 (4) | |
| H12 | 0.3328 | 0.7673 | 0.8056 | 0.054* | |
| C13 | 0.4300 (3) | 0.4809 (3) | 0.78916 (18) | 0.0489 (5) | |
| H13A | 0.5192 | 0.5528 | 0.8446 | 0.059* | |
| H13B | 0.4916 | 0.4010 | 0.7491 | 0.059* | |
| C14 | 0.3080 (3) | 0.4023 (3) | 0.8615 (2) | 0.0550 (5) | |
| H14 | 0.3600 | 0.3461 | 0.9228 | 0.066* | |
| C15 | 0.1374 (4) | 0.4035 (3) | 0.8484 (3) | 0.0709 (7) | |
| H15A | 0.0789 | 0.4579 | 0.7884 | 0.085* | |
| H15B | 0.0727 | 0.3499 | 0.8990 | 0.085* |
| Br1 | 0.05960 (16) | 0.03754 (12) | 0.08491 (19) | 0.00970 (9) | 0.01673 (12) | 0.00593 (10) |
| Cl1 | 0.0863 (5) | 0.0732 (4) | 0.0594 (3) | 0.0184 (3) | 0.0175 (3) | −0.0136 (3) |
| N1 | 0.0482 (9) | 0.0466 (9) | 0.0414 (8) | 0.0074 (7) | 0.0058 (7) | 0.0105 (7) |
| N2 | 0.0446 (9) | 0.0398 (8) | 0.0399 (8) | 0.0079 (7) | 0.0079 (7) | 0.0090 (6) |
| N3 | 0.0486 (9) | 0.0397 (8) | 0.0383 (8) | 0.0076 (7) | 0.0078 (7) | 0.0100 (6) |
| C1 | 0.0462 (11) | 0.0510 (11) | 0.0425 (10) | 0.0094 (9) | 0.0090 (8) | 0.0066 (8) |
| C2 | 0.0508 (12) | 0.0515 (12) | 0.0511 (11) | 0.0131 (9) | 0.0133 (9) | 0.0050 (9) |
| C3 | 0.0479 (11) | 0.0554 (12) | 0.0489 (11) | 0.0053 (9) | 0.0158 (9) | −0.0042 (9) |
| C4 | 0.0542 (12) | 0.0648 (14) | 0.0407 (10) | 0.0030 (10) | 0.0055 (9) | 0.0041 (9) |
| C5 | 0.0487 (11) | 0.0521 (12) | 0.0464 (10) | 0.0054 (9) | 0.0033 (9) | 0.0092 (9) |
| C6 | 0.0370 (9) | 0.0468 (11) | 0.0426 (9) | 0.0016 (8) | 0.0086 (8) | 0.0058 (8) |
| C7 | 0.0369 (9) | 0.0427 (10) | 0.0419 (9) | 0.0040 (8) | 0.0082 (7) | 0.0094 (8) |
| C8 | 0.0390 (9) | 0.0395 (9) | 0.0410 (9) | 0.0042 (7) | 0.0095 (7) | 0.0117 (7) |
| C9 | 0.0394 (10) | 0.0421 (10) | 0.0441 (9) | 0.0056 (8) | 0.0096 (8) | 0.0145 (8) |
| C10 | 0.0441 (10) | 0.0407 (10) | 0.0546 (11) | 0.0079 (8) | 0.0094 (9) | 0.0182 (9) |
| C11 | 0.0436 (10) | 0.0347 (9) | 0.0584 (11) | 0.0048 (8) | 0.0161 (9) | 0.0094 (8) |
| C12 | 0.0508 (11) | 0.0403 (10) | 0.0458 (10) | 0.0038 (8) | 0.0130 (9) | 0.0054 (8) |
| C13 | 0.0532 (12) | 0.0523 (12) | 0.0416 (10) | 0.0121 (9) | 0.0019 (9) | 0.0107 (9) |
| C14 | 0.0662 (15) | 0.0521 (12) | 0.0472 (11) | 0.0093 (10) | 0.0024 (10) | 0.0170 (9) |
| C15 | 0.0673 (17) | 0.0755 (18) | 0.0765 (17) | 0.0097 (13) | 0.0144 (13) | 0.0348 (14) |
| Br1—C11 | 1.886 (2) | C6—C1 | 1.395 (3) |
| Cl1—C3 | 1.744 (2) | C6—C5 | 1.401 (3) |
| N1—C7 | 1.342 (3) | C7—C6 | 1.464 (3) |
| N1—C9 | 1.371 (3) | C8—C9 | 1.431 (3) |
| N2—C7 | 1.375 (2) | C9—C10 | 1.373 (3) |
| N2—C8 | 1.327 (2) | C10—H10 | 0.9300 |
| N3—C8 | 1.352 (2) | C11—C10 | 1.399 (3) |
| N3—C12 | 1.355 (3) | C11—C12 | 1.373 (3) |
| N3—C13 | 1.477 (2) | C12—H12 | 0.9300 |
| C1—H1 | 0.9300 | C13—H13A | 0.9700 |
| C1—C2 | 1.381 (3) | C13—H13B | 0.9700 |
| C2—H2 | 0.9300 | C13—C14 | 1.480 (3) |
| C2—C3 | 1.384 (3) | C14—H14 | 0.9300 |
| C4—H4 | 0.9300 | C14—C15 | 1.287 (4) |
| C4—C3 | 1.378 (3) | C15—H15A | 0.9300 |
| C5—H5 | 0.9300 | C15—H15B | 0.9300 |
| C5—C4 | 1.377 (3) | ||
| Br1···C14i | 3.624 (2) | N3···H15A | 2.5350 |
| Br1···C15i | 3.660 (3) | C1···C11ii | 3.532 (3) |
| Br1···C2ii | 3.677 (2) | C1···C12ii | 3.472 (3) |
| Br1···C6iii | 3.729 (2) | C5···C13ii | 3.595 (3) |
| Br1···H10iv | 3.1682 | C6···C12ii | 3.470 (3) |
| Cl1···H12v | 2.8304 | C7···C8ii | 3.512 (3) |
| Cl1···H14vi | 3.1002 | C7···C10iii | 3.499 (3) |
| Cl1···H15Bvii | 2.9750 | C8···C15 | 3.559 (4) |
| N3···C6ii | 3.437 (3) | C9···C9iii | 3.473 (3) |
| N1···H5 | 2.6087 | C12···C15 | 3.378 (3) |
| N1···H15Aiii | 2.5889 | C5···H13Aii | 2.8677 |
| N2···H13B | 2.5360 | C12···H15A | 2.8971 |
| N2···H1 | 2.5251 | H12···H13A | 2.4427 |
| C7—N1—C9 | 102.65 (16) | N2—C8—C9 | 111.53 (16) |
| C8—N2—C7 | 101.17 (15) | N3—C8—C9 | 120.81 (17) |
| C8—N3—C12 | 119.16 (16) | N1—C9—C8 | 107.12 (17) |
| C8—N3—C13 | 120.08 (16) | N1—C9—C10 | 132.60 (18) |
| C12—N3—C13 | 120.76 (16) | C10—C9—C8 | 120.27 (18) |
| C6—C1—H1 | 119.5 | C9—C10—C11 | 116.59 (18) |
| C2—C1—C6 | 120.95 (19) | C9—C10—H10 | 121.7 |
| C2—C1—H1 | 119.5 | C11—C10—H10 | 121.7 |
| C1—C2—H2 | 120.5 | C10—C11—Br1 | 120.71 (15) |
| C1—C2—C3 | 118.9 (2) | C12—C11—Br1 | 117.03 (16) |
| C3—C2—H2 | 120.5 | C12—C11—C10 | 122.18 (18) |
| C4—C3—Cl1 | 119.49 (17) | N3—C12—C11 | 120.99 (18) |
| C4—C3—C2 | 121.6 (2) | N3—C12—H12 | 119.5 |
| C2—C3—Cl1 | 118.93 (18) | C11—C12—H12 | 119.5 |
| C5—C4—H4 | 120.4 | N3—C13—H13A | 108.8 |
| C5—C4—C3 | 119.2 (2) | N3—C13—H13B | 108.8 |
| C3—C4—H4 | 120.4 | N3—C13—C14 | 113.74 (18) |
| C6—C5—H5 | 119.5 | H13A—C13—H13B | 107.7 |
| C4—C5—C6 | 120.9 (2) | C14—C13—H13A | 108.8 |
| C4—C5—H5 | 119.5 | C14—C13—H13B | 108.8 |
| C1—C6—C7 | 120.23 (17) | C13—C14—H14 | 116.6 |
| C1—C6—C5 | 118.48 (19) | C15—C14—C13 | 126.8 (2) |
| C5—C6—C7 | 121.28 (18) | C15—C14—H14 | 116.6 |
| N2—C7—C6 | 120.09 (17) | C14—C15—H15A | 120.0 |
| N1—C7—N2 | 117.53 (17) | C14—C15—H15B | 120.0 |
| N1—C7—C6 | 122.39 (17) | H15A—C15—H15B | 120.0 |
| N2—C8—N3 | 127.66 (17) | ||
| C9—N1—C7—N2 | −0.3 (2) | C6—C5—C4—C3 | 1.1 (3) |
| C9—N1—C7—C6 | −179.75 (17) | C5—C6—C1—C2 | 0.0 (3) |
| C7—N1—C9—C8 | 0.5 (2) | C7—C6—C1—C2 | −179.96 (19) |
| C7—N1—C9—C10 | 179.6 (2) | C1—C6—C5—C4 | −0.8 (3) |
| C8—N2—C7—N1 | 0.0 (2) | C7—C6—C5—C4 | 179.11 (19) |
| C8—N2—C7—C6 | 179.45 (17) | N1—C7—C6—C1 | −177.28 (18) |
| C7—N2—C8—N3 | −178.58 (19) | N1—C7—C6—C5 | 2.8 (3) |
| C7—N2—C8—C9 | 0.3 (2) | N2—C7—C6—C1 | 3.3 (3) |
| C12—N3—C8—N2 | 178.81 (19) | N2—C7—C6—C5 | −176.66 (18) |
| C12—N3—C8—C9 | 0.0 (3) | N2—C8—C9—N1 | −0.5 (2) |
| C13—N3—C8—N2 | −0.5 (3) | N2—C8—C9—C10 | −179.82 (17) |
| C13—N3—C8—C9 | −179.29 (18) | N3—C8—C9—N1 | 178.47 (17) |
| C8—N3—C12—C11 | 0.8 (3) | N3—C8—C9—C10 | −0.8 (3) |
| C13—N3—C12—C11 | −179.93 (19) | N1—C9—C10—C11 | −178.3 (2) |
| C8—N3—C13—C14 | −97.3 (2) | C8—C9—C10—C11 | 0.8 (3) |
| C12—N3—C13—C14 | 83.4 (2) | C12—C11—C10—C9 | 0.0 (3) |
| C6—C1—C2—C3 | 0.6 (3) | Br1—C11—C10—C9 | 176.73 (14) |
| C1—C2—C3—Cl1 | −178.98 (17) | Br1—C11—C12—N3 | −177.67 (15) |
| C1—C2—C3—C4 | −0.4 (3) | C10—C11—C12—N3 | −0.8 (3) |
| C5—C4—C3—Cl1 | 178.14 (17) | N3—C13—C14—C15 | 1.2 (4) |
| C5—C4—C3—C2 | −0.5 (3) |
| H··· | ||||
| C15—H15 | 0.93 | 2.59 | 3.454 (4) | 155 |