Literature DB >> 30707909

Polymer nanodiscs: Advantages and limitations.

Thirupathi Ravula1, Nathaniel Z Hardin2, Ayyalusamy Ramamoorthy3.   

Abstract

There is considerable interest in the development of membrane mimetics to study the structure, dynamics and function of membrane proteins. Polymer nanodiscs have been useful as a membrane mimetic by not only providing a native-like membrane environment, but also have the ability to extract the desired membrane protein directly from the cell membrane. In spite of such great potential, polymer nanodiscs have their disadvantages including lack of size control and instability at low pH and with divalent metals. In this review, we discuss how these limitations have been overcome by simple modifications of synthetic polymers commonly used to form nanodiscs. Recently, size control has been achieved using an ethanolamine functionalization of a low molecular weight polymer. This size control enabled the use of polymer-based lipid-nanodiscs in solution NMR and macro-nanodiscs in solid-state NMR applications. The introduction of quaternary ammonium functional groups has been shown to improve the stability in the presence of low pH and divalent metal ions, forming highly monodispersed nanodiscs. The polymer charge has been shown to play a significant role on the reconstitution of membrane proteins due to the high charge density on the nanodisc's belt. These recent developments have expanded the applications of polymer nanodiscs to study the membrane proteins using wide variety of techniques including NMR, Cryo-EM and other biophysical techniques.
Copyright © 2019 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Membrane proteins; Polymer charge; Polymer nanodiscs; Size control; Solid-state NMR; pH resistant

Mesh:

Substances:

Year:  2019        PMID: 30707909      PMCID: PMC6497063          DOI: 10.1016/j.chemphyslip.2019.01.010

Source DB:  PubMed          Journal:  Chem Phys Lipids        ISSN: 0009-3084            Impact factor:   3.329


  47 in total

1.  Reconstitution of membrane proteins into liposomes.

Authors:  Jean-Louis Rigaud; Daniel Lévy
Journal:  Methods Enzymol       Date:  2003       Impact factor: 1.600

2.  Bioinspired, Size-Tunable Self-Assembly of Polymer-Lipid Bilayer Nanodiscs.

Authors:  Thirupathi Ravula; Sudheer Kumar Ramadugu; Giacomo Di Mauro; Ayyalusamy Ramamoorthy
Journal:  Angew Chem Int Ed Engl       Date:  2017-08-10       Impact factor: 15.336

3.  Membrane proteins solubilized intact in lipid containing nanoparticles bounded by styrene maleic acid copolymer.

Authors:  Timothy J Knowles; Rachael Finka; Corinne Smith; Yu-Pin Lin; Tim Dafforn; Michael Overduin
Journal:  J Am Chem Soc       Date:  2009-06-10       Impact factor: 15.419

4.  Characterizing the structure of lipodisq nanoparticles for membrane protein spectroscopic studies.

Authors:  Rongfu Zhang; Indra D Sahu; Lishan Liu; Anna Osatuke; Raven G Comer; Carole Dabney-Smith; Gary A Lorigan
Journal:  Biochim Biophys Acta       Date:  2014-05-20

5.  Detergent-mediated reconstitution of membrane proteins.

Authors:  J Knol; K Sjollema; B Poolman
Journal:  Biochemistry       Date:  1998-11-17       Impact factor: 3.162

6.  Formation of pH-Resistant Monodispersed Polymer-Lipid Nanodiscs.

Authors:  Thirupathi Ravula; Nathaniel Z Hardin; Sudheer Kumar Ramadugu; Sarah J Cox; Ayyalusamy Ramamoorthy
Journal:  Angew Chem Int Ed Engl       Date:  2018-01-08       Impact factor: 15.336

Review 7.  Membrane proteins, lipids and detergents: not just a soap opera.

Authors:  Annela M Seddon; Paul Curnow; Paula J Booth
Journal:  Biochim Biophys Acta       Date:  2004-11-03

8.  Characterization of magnetically orientable bilayers in mixtures of dihexanoylphosphatidylcholine and dimyristoylphosphatidylcholine by solid-state NMR.

Authors:  C R Sanders; J P Schwonek
Journal:  Biochemistry       Date:  1992-09-22       Impact factor: 3.162

Review 9.  Purification of membrane proteins free from conventional detergents: SMA, new polymers, new opportunities and new insights.

Authors:  Zoe Stroud; Stephen C L Hall; Tim R Dafforn
Journal:  Methods       Date:  2018-03-31       Impact factor: 3.608

10.  Stable and Functional Rhomboid Proteases in Lipid Nanodiscs by Using Diisobutylene/Maleic Acid Copolymers.

Authors:  Marta Barniol-Xicota; Steven H L Verhelst
Journal:  J Am Chem Soc       Date:  2018-10-26       Impact factor: 15.419

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  15 in total

1.  The hydrodynamic motion of Nanodiscs.

Authors:  Tyler Camp; Mark McLean; Mallory Kato; Lionel Cheruzel; Stephen Sligar
Journal:  Chem Phys Lipids       Date:  2019-02-22       Impact factor: 3.329

2.  Natural-abundance 17O NMR spectroscopy of magnetically aligned lipid nanodiscs.

Authors:  Thirupathi Ravula; Bikash R Sahoo; Xiaofeng Dai; Ayyalusamy Ramamoorthy
Journal:  Chem Commun (Camb)       Date:  2020-08-27       Impact factor: 6.222

3.  Dark, Ultra-Dark and Ultra-Bright Nanodiscs for membrane protein investigations.

Authors:  Mark A McLean; Ilia G Denisov; Yelena V Grinkova; Stephen G Sligar
Journal:  Anal Biochem       Date:  2020-08-01       Impact factor: 3.365

4.  Two Distinct Structures of Membrane-Associated Homodimers of GTP- and GDP-Bound KRAS4B Revealed by Paramagnetic Relaxation Enhancement.

Authors:  Ki-Young Lee; Zhenhao Fang; Masahiro Enomoto; Genevieve Gasmi-Seabrook; Le Zheng; Shohei Koide; Mitsuhiko Ikura; Christopher B Marshall
Journal:  Angew Chem Int Ed Engl       Date:  2020-04-30       Impact factor: 15.336

5.  Magnetic Alignment of Polymer Nanodiscs Probed by Solid-State NMR Spectroscopy.

Authors:  Thirupathi Ravula; JaeWoong Kim; Dong-Kuk Lee; Ayyalusamy Ramamoorthy
Journal:  Langmuir       Date:  2020-01-30       Impact factor: 3.882

6.  A theoretical assessment of structure determination of multi-span membrane proteins by oriented sample solid-state NMR spectroscopy.

Authors:  Daniel K Weber; Gianluigi Veglia
Journal:  Aust J Chem       Date:  2019-09-20       Impact factor: 1.321

Review 7.  Native Mass Spectrometry of Membrane Proteins.

Authors:  James E Keener; Guozhi Zhang; Michael T Marty
Journal:  Anal Chem       Date:  2020-10-28       Impact factor: 6.986

8.  Synthesis, Characterization, and Nanodisc Formation of Non-ionic Polymers*.

Authors:  Thirupathi Ravula; Ayyalusamy Ramamoorthy
Journal:  Angew Chem Int Ed Engl       Date:  2021-06-28       Impact factor: 16.823

Review 9.  Detergent-free systems for structural studies of membrane proteins.

Authors:  Youzhong Guo
Journal:  Biochem Soc Trans       Date:  2021-06-30       Impact factor: 5.407

10.  Solid-State NMR Study to Probe the Effects of Divalent Metal Ions (Ca2+ and Mg2+) on the Magnetic Alignment of Polymer-Based Lipid Nanodiscs.

Authors:  Thirupathi Ravula; Xiaofeng Dai; Ayyalusamy Ramamoorthy
Journal:  Langmuir       Date:  2021-06-15       Impact factor: 4.331

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